RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 EIF2B3Q9NR50 452 aaKnown RBP6.33□□□□□ -1.4
HERC4-209ENST00000473533 ARHGEF4Q9NR80 690 aa6.33□□□□□ -1.4
HERC4-209ENST00000473533 PCMTD2Q9NV79 361 aa6.33□□□□□ -1.4
HERC4-209ENST00000473533 ARMCX1Q9P291 453 aa6.33□□□□□ -1.4
HERC4-209ENST00000473533 MORF4L1Q9UBU8 362 aa6.33□□□□□ -1.4
HERC4-209ENST00000473533 TRPC5Q9UL62 973 aaPredicted RBP6.33□□□□□ -1.4
HERC4-209ENST00000473533 PADI4Q9UM07 663 aa6.33□□□□□ -1.4
HERC4-209ENST00000473533 GMEB1Q9Y692 573 aa6.33□□□□□ -1.4
HERC4-209ENST00000473533 CNTNAP1P78357 1384 aa6.33□□□□□ -1.4
HERC4-209ENST00000473533 MDM4O15151 490 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 RFPL1O75677 317 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TNFAIP8O95379 198 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 MMP10P09238 476 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 CPA3P15088 417 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TCF4P15884 667 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 ALOX15P16050 662 aaPredicted RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 SLC1A6P48664 564 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PTPN11Q06124 597 aaPredicted RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 BTKQ06187 659 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TMEM132AQ24JP5 1023 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SMTNL2Q2TAL5 461 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 FASTKD1Q53R41 847 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 FAM102AQ5T9C2 384 aaPredicted RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 MEX3CQ5U5Q3 659 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 KLC3Q6P597 504 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 MPZL3Q6UWV2 235 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 CCDC60Q8IWA6 550 aaPredicted RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 GDPD5Q8WTR4 605 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 NAT14Q8WUY8 206 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 LRGUKQ96M69 825 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 NDNQ99608 321 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 BCO2Q9BYV7 579 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SLC13A1Q9BZW2 595 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 RPF1Q9H9Y2 349 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.32□□□□□ -1.4
HERC4-209ENST00000473533 DTNAQ9Y4J8 743 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 WASF2Q9Y6W5 498 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 ZNF541Q9H0D2 1346 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 A6NJR5 290 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PRR5-ARHGAP8B1AHC4 643 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 VWA5AO00534 786 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 DENRO43583 198 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 PRKCBP05771 671 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 CYP2C8P10632 490 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PROZP22891 400 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 CPA2P48052 419 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 ARHGAP8P85298 464 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TFAMQ00059 246 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 STEAP4Q687X5 459 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PDPK2PQ6A1A2 396 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 DENND1BQ6P3S1 775 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TTC7BQ86TV6 843 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 NT5DC4Q86YG4 428 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 FBXW8Q8N3Y1 598 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 ADCY4Q8NFM4 1077 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 EZH1Q92800 747 aaPredicted RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 MTMR12Q9C0I1 747 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 RPAP3Q9H6T3 665 aaPredicted RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 VRTNQ9H8Y1 702 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 EPS15L1Q9UBC2 864 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PCSK1NQ9UHG2 260 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 CPSF3Q9UKF6 684 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 PSMD13Q9UNM6 376 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 DNAJC16Q9Y2G8 782 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PTPRJQ12913 1337 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 A0A088AWK7 358 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TCRBV7S3A2A0A539 114 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 DYTNA2CJ06 578 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 EIF4E1BA6NMX2 242 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 MAFO75444 373 aaPredicted RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 MPOP05164 745 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 APRTP07741 180 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 HARSP12081 509 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 PDGFRAP16234 1089 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 VCLP18206 1134 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 DNAJB1P25685 340 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SDC4P31431 198 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SCNN1AP37088 669 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 ASPAP45381 313 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PDE1BQ01064 536 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PDK3Q15120 406 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TRIP10Q15642 601 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 FAXCQ5TGI0 409 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SLC9A4Q6AI14 798 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TXNRD3NBQ6F5E7 133 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 PGM2L1Q6PCE3 622 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 B3GNT6Q6ZMB0 384 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TREML1Q86YW5 311 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 SEPT12Q8IYM1 358 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 MARVELD2Q8N4S9 558 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 WDTC1Q8N5D0 677 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 RDH11Q8TC12 318 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TMEM143Q96AN5 459 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 TMEM176AQ96HP8 235 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 WDR83Q9BRX9 315 aaKnown RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 NSMCE4AQ9NXX6 385 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 RCOR3Q9P2K3 495 aaPredicted RBP6.32□□□□□ -1.4
HERC4-209ENST00000473533 CDH22Q9UJ99 828 aa6.32□□□□□ -1.4
HERC4-209ENST00000473533 VPS28Q9UK41 221 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms