RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SLC7A5P2Q9GIP4 190 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 PRMT7Q9NVM4 692 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 MGAT4DA6NG13 374 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 BAIAP3O94812 1187 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 ATG7O95352 703 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 ALOX15P16050 662 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-209ENST00000472056 FAUP35544 74 aaKnown RBP13.66□□□□□ -0.22
COL6A3-209ENST00000472056 INTS11Q5TA45 600 aaKnown RBP13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.66□□□□□ -0.22
COL6A3-209ENST00000472056 AIFM3Q96NN9 605 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 PRDM8Q9NQV8 689 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 ACOT9Q9Y305 439 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 B3GALT6Q96L58 329 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 CDC42EP4Q9H3Q1 356 aaKnown RBP13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SEC31BQ9NQW1 1179 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 CLTBP09497 229 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 ADRA2BP18089 450 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SLC30A5Q8TAD4 765 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 C17orf50Q8WW18 174 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 PNKPQ96T60 521 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 RIT2Q99578 217 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 CHID1Q9BWS9 393 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 AFF2P51816 1311 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 LMTK3Q96Q04 1460 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SYNDIG1LA6NDD5 238 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 TEX46H3BTG2 121 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 FBXO21O94952 628 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 NFYCQ13952 458 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SPANXN3Q5MJ09 141 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 AKAP14Q86UN6 197 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 PAFAH2Q99487 392 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 GGT7Q9UJ14 662 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 H7C1W4 665 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SASH1O94885 1247 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 RIPK1Q13546 671 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SLC15A2Q16348 729 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 TYSND1Q2T9J0 566 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 FBXO42Q6P3S6 717 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 OTOAQ7RTW8 1153 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SPATA2LQ8IUW3 424 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-209ENST00000472056 MREGQ8N565 214 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 BSNDQ8WZ55 320 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 DCP1AQ9NPI6 582 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-209ENST00000472056 RP1P56715 2156 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 PLK4O00444 970 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 ITGA2P17301 1181 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 SLC1A6P48664 564 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 BNIP2Q12982 314 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 GPR101Q96P66 508 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-209ENST00000472056 TBCBQ99426 244 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 RACGAP1Q9H0H5 632 aa13.66□□□□□ -0.22
COL6A3-209ENST00000472056 FCER1AP12319 257 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 ST8SIA6P61647 398 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF605Q86T29 641 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 REXO1L1PQ8IX06 675 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 UBASH3BQ8TF42 649 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 ADPRHL2Q9NX46 363 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 NDUFAF1Q9Y375 327 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 USP17L5A8MUK1 530 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF12P17014 697 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 DCAF4L1Q3SXM0 396 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 RAD9BQ6WBX8 426 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 NEDD1Q8NHV4 660 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 ASB14A6NK59 587 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 AP1G2O75843 785 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 LDOC1O95751 146 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-209ENST00000472056 GJA8P48165 433 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 C1QBPQ07021 282 aaKnown RBP13.65□□□□□ -0.22
COL6A3-209ENST00000472056 PTPN21Q16825 1174 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 GPR63Q9BZJ6 419 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 TRIM39Q9HCM9 518 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 GABBR1Q9UBS5 961 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 CROTQ9UKG9 612 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 VIL1P09327 827 aaKnown RBP13.65□□□□□ -0.22
COL6A3-209ENST00000472056 SOAT1P35610 550 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 SFRP1Q8N474 314 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 IL5RAQ01344 420 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 SBK1Q52WX2 424 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 TMIEQ8NEW7 156 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF507Q8TCN5 953 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 WDR41Q9HAD4 459 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 OPLAHO14841 1288 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 FAM20BO75063 409 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 UNC5CO95185 931 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 AAGABQ6PD74 315 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 CACTIN-AS1Q8N1I8 211 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 PDGFCQ9NRA1 345 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 BCLAF3A2AJT9 711 aaKnown RBP13.65□□□□□ -0.22
COL6A3-209ENST00000472056 HAT1O14929 419 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 PSMB9P28065 219 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 PTPN7P35236 360 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 HARS2P49590 506 aaKnown RBP13.65□□□□□ -0.22
COL6A3-209ENST00000472056 TWF1Q12792 350 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 NAA30Q147X3 362 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-209ENST00000472056 AENQ8WTP8 325 aaKnown RBP13.65□□□□□ -0.22
COL6A3-209ENST00000472056 TP53INP1Q96A56 240 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 RIBC2Q9H4K1 309 aa13.65□□□□□ -0.22
COL6A3-209ENST00000472056 KDM6BO15054 1643 aa13.64□□□□□ -0.23
COL6A3-209ENST00000472056 EIF4E1BA6NMX2 242 aaKnown RBP13.64□□□□□ -0.23
COL6A3-209ENST00000472056 CNPP09543 421 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms