RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 RNF38Q9H0F5 515 aa18.6■□□□□ 0.57
COL7A1-205ENST00000465238 CHORDC1Q9UHD1 332 aaPredicted RBP18.6■□□□□ 0.57
COL7A1-205ENST00000465238 CNOT1A5YKK6 2376 aaKnown RBP18.59■□□□□ 0.57
COL7A1-205ENST00000465238 CBFA2T2O43439 604 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 EPN2O95208 641 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 APBB3O95704 486 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 KRT9P35527 623 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 SOX5P35711 763 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 KIF11P52732 1056 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 DMC1Q14565 340 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 MEA1Q16626 185 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 PKDCCQ504Y2 493 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 GPRIN1Q7Z2K8 1008 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 SLC47A2Q86VL8 602 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 DDX42Q86XP3 938 aaKnown RBP eCLIP18.59■□□□□ 0.57
COL7A1-205ENST00000465238 ARRDC1-AS1Q9H2J1 176 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 PDCL3Q9H2J4 239 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 LRRC4Q9HBW1 653 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 POLR3BQ9NW08 1133 aaPredicted RBP18.59■□□□□ 0.57
COL7A1-205ENST00000465238 EBF1Q9UH73 591 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 CPQQ9Y646 472 aa18.59■□□□□ 0.57
COL7A1-205ENST00000465238 FAM92AA1XBS5 289 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 TULP2O00295 520 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 GFPT2O94808 682 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 ZNF806P0C7X5 589 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 OPRD1P41143 372 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 PLA2G4AP47712 749 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 JAM2P57087 298 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 DENND1BQ6P3S1 775 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 ADGRG2Q8IZP9 1017 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 SLC35F5Q8WV83 523 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 TLR8Q9NR97 1041 aaKnown RBP18.58■□□□□ 0.56
COL7A1-205ENST00000465238 SMPD4Q9NXE4 827 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 SCML2Q9UQR0 700 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 PCDHGA5Q9Y5G8 931 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 ACACBO00763 2458 aa18.58■□□□□ 0.56
COL7A1-205ENST00000465238 GDF9O60383 454 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 CYP17A1P05093 508 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 CYP11B1P15538 503 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 TKTL1P51854 596 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 GAB4Q2WGN9 574 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 RAB41Q5JT25 222 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 SIX6OS1Q8N1H7 587 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 C12orf50Q8NA57 414 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-205ENST00000465238 USP33Q8TEY7 942 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 KCTD13Q8WZ19 329 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 NUP58Q9BVL2 599 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 XPO4Q9C0E2 1151 aaKnown RBP18.57■□□□□ 0.56
COL7A1-205ENST00000465238 GMIPQ9P107 970 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 CFAP97Q9P2B7 532 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 USP3Q9Y6I4 520 aa18.57■□□□□ 0.56
COL7A1-205ENST00000465238 EPG5Q9HCE0 2579 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 K7EQS6 105 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 MBL2P11226 248 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-205ENST00000465238 EIF2DP41214 584 aaKnown RBP18.56■□□□□ 0.56
COL7A1-205ENST00000465238 GPD2P43304 727 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 RGS7P49802 495 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 LIMK1P53667 647 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 DHCR24Q15392 516 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 ELF2Q15723 593 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 PLK5Q496M5 336 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 AASDHQ4L235 1098 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-205ENST00000465238 PMF1Q6P1K2 205 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 CCDC186Q7Z3E2 898 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 TSTD1Q8NFU3 115 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 DDX1Q92499 740 aaKnown RBP18.56■□□□□ 0.56
COL7A1-205ENST00000465238 HSFY1Q96LI6 401 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 EDEM3Q9BZQ6 932 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 TBC1D14Q9P2M4 693 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 PCDHGC3Q9UN70 934 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 CEP83Q9Y592 693 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 MYOFQ9NZM1 2061 aa18.56■□□□□ 0.56
COL7A1-205ENST00000465238 LAMA1P25391 3075 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 E2F8A0AVK6 867 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 ZBED1O96006 694 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 ADH1CP00326 375 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 CCDC172P0C7W6 258 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 LCP1P13796 627 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 PSEN1P49768 467 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 ARID5AQ03989 594 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 ADIGQ0VDE8 80 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 SF3A2Q15428 464 aaKnown RBP18.55■□□□□ 0.56
COL7A1-205ENST00000465238 C2orf27AQ580R0 203 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 PPM1JQ5JR12 505 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 PLA2G2CQ5R387 149 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 HECTD3Q5T447 861 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 TAF3Q5VWG9 929 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 SNX30Q5VWJ9 437 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 FMNL3Q8IVF7 1028 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 ARHGAP18Q8N392 663 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 STK32AQ8WU08 396 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 ULBP1Q9BZM6 244 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 RBSNQ9H1K0 784 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 DUSP15Q9H1R2 295 aaPredicted RBP18.55■□□□□ 0.56
COL7A1-205ENST00000465238 LHX5Q9H2C1 402 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 ST7Q9NRC1 585 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 MYO6Q9UM54 1294 aa18.55■□□□□ 0.56
COL7A1-205ENST00000465238 COCHO43405 550 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 RHOBTB1O94844 696 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 ADRB1P08588 477 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms