RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ACOT1Q86TX2 421 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 CCDC60Q8IWA6 550 aaPredicted RBP19.67■□□□□ 0.74
UPF1-201ENST00000262803 ZKSCAN4Q969J2 545 aaPredicted RBP19.67■□□□□ 0.74
UPF1-201ENST00000262803 CNBD2Q96M20 576 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 TLR10Q9BXR5 811 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 AP3M1Q9Y2T2 418 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 MSCO60682 206 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 CLCN3P51790 818 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 PTPN11Q06124 597 aaPredicted RBP19.67■□□□□ 0.74
UPF1-201ENST00000262803 SH3GL3Q99963 347 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 CYP39A1Q9NYL5 469 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 POLG2Q9UHN1 485 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 TM9SF1O15321 606 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 ATP5BP06576 529 aaKnown RBP19.67■□□□□ 0.74
UPF1-201ENST00000262803 PIK3CGP48736 1102 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.67■□□□□ 0.74
UPF1-201ENST00000262803 CNDP1Q96KN2 507 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 CACNA2D2Q9NY47 1150 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 ITSN1Q15811 1721 aa19.67■□□□□ 0.74
UPF1-201ENST00000262803 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.66■□□□□ 0.74
UPF1-201ENST00000262803 PHACTR4Q8IZ21 702 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 SPATC1LQ9H0A9 340 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 IL1RL2Q9HB29 575 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 NFIBO00712 420 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 TUFMP49411 452 aaKnown RBP19.66■□□□□ 0.74
UPF1-201ENST00000262803 CLK1P49759 484 aaKnown RBP19.66■□□□□ 0.74
UPF1-201ENST00000262803 ACAP1Q15027 740 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 RCN1Q15293 331 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 ZPBP2Q6X784 338 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 VPS33AQ96AX1 596 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 TUBGCP3Q96CW5 907 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 BARX2Q9UMQ3 279 aaPredicted RBP19.66■□□□□ 0.74
UPF1-201ENST00000262803 MGAT4DA6NG13 374 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 TMEM114B3SHH9 223 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 C2CD2LO14523 706 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 USP1O94782 785 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 TPBGLP0DKB5 382 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 PPP2R1BP30154 601 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 NUDT2P50583 147 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 SGO1Q5FBB7 561 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 CENPLQ8N0S6 344 aaPredicted RBP19.66■□□□□ 0.74
UPF1-201ENST00000262803 SIKE1Q9BRV8 207 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 RAD21L1Q9H4I0 556 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 GPATCH2LQ9NWQ4 482 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 KLK14Q9P0G3 267 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 NCKAP1Q9Y2A7 1128 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 LOC102724159A0A0B4J2E5 919 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 O00370 1275 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 KRT6AP02538 564 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 KRT6BP04259 564 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 HPGDP15428 266 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 KRT6CP48668 564 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 CHRNB3Q05901 458 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 ZNF268Q14587 947 aaPredicted RBP19.66■□□□□ 0.74
UPF1-201ENST00000262803 PWP2Q15269 919 aaKnown RBP19.66■□□□□ 0.74
UPF1-201ENST00000262803 PRMT9Q6P2P2 845 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 CYP4Z2PQ8N1L4 340 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 TMEM86AQ8N2M4 240 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 HDAC7Q8WUI4 952 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 OSBPL10Q9BXB5 764 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 ELOVL4Q9GZR5 314 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 CISHQ9NSE2 258 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 AKAP7Q9P0M2 348 aaPredicted RBP19.66■□□□□ 0.74
UPF1-201ENST00000262803 SUPT7LO94864 414 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 NAA20P61599 178 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 SLC27A1Q6PCB7 646 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 MTSS1LQ765P7 747 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 SMARCD1Q96GM5 515 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 UROC1Q96N76 676 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 SYT15Q9BQS2 421 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 PDCD2LQ9BRP1 358 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 ZSCAN32Q9NX65 697 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 MAPRE3Q9UPY8 281 aa19.66■□□□□ 0.74
UPF1-201ENST00000262803 NWD1Q149M9 1564 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 HACD1B0YJ81 288 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 VPS4BO75351 444 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 GYS1P13807 737 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 NR2C2P49116 596 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 INHBEP58166 350 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 L3MBTL3Q96JM7 780 aaPredicted RBP19.65■□□□□ 0.74
UPF1-201ENST00000262803 RASSF9O75901 435 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 PAEPP09466 180 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 MYL6P60660 151 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 THUMPD3Q9BV44 507 aaKnown RBP19.65■□□□□ 0.74
UPF1-201ENST00000262803 ABHD16BQ9H3Z7 469 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 NCKIPSDQ9NZQ3 722 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 LRRIQ1Q96JM4 1722 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 E7ENQ6 273 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 SERPINI2O75830 405 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 SERPINF2P08697 491 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 EFEMP1Q12805 493 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 TRIP4Q15650 581 aaPredicted RBP19.65■□□□□ 0.74
UPF1-201ENST00000262803 VAT1Q99536 393 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 CCDC3Q9BQI4 270 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 NDUFA13Q9P0J0 144 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 TMCO1Q9UM00 188 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 A0A088AWK7 358 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 PSMD12O00232 456 aaPredicted RBP19.65■□□□□ 0.74
UPF1-201ENST00000262803 ACADSP16219 412 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 ZNF10P21506 573 aaPredicted RBP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms