RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CCSER2Q9H7U1 834 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 AFF4Q9UHB7 1163 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 PLXNA4Q9HCM2 1894 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 CAPN9O14815 690 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 SYN3O14994 580 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 CYP26A1O43174 497 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 COL9A1P20849 921 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 GJC1P36383 396 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 FMO5P49326 533 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 PGFP49763 221 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 ITIH3Q06033 890 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 RAB33AQ14088 237 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 CCDC6Q16204 474 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 CDO1Q16878 200 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 GOLGA7BQ2TAP0 167 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM78AQ5JUQ0 283 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 TMEM31Q5JXX7 168 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 TPRG1Q6ZUI0 275 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 ZNF354CQ86Y25 554 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 BCAS4Q8TDM0 211 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 MSLNLQ96KJ4 702 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 TUBGCP2Q9BSJ2 902 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 NT5C1AQ9BXI3 368 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 RASAL2Q9UJF2 1139 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 LZTS1Q9Y250 596 aa8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 RP1L1Q8IWN7 2480 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-219ENST00000514096 HEPACAM2A8MVW5 462 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 KCNJ18B7U540 433 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 EIF3FO00303 357 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 HALP42357 657 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 PDE6CP51160 858 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 GPR17Q13304 367 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 KCNJ12Q14500 433 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SURF1Q15526 300 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 ZBTB6Q15916 424 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 INTS6LQ5JSJ4 861 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM182AQ5T1J6 154 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 RBM12BQ8IXT5 1001 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 ZNF366Q8N895 744 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 CEP112Q8N8E3 955 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 HVCN1Q96D96 273 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 IGSF5Q9NSI5 407 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 GMIPQ9P107 970 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 DPP7Q9UHL4 492 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 FBXW11Q9UKB1 542 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 DSEQ9UL01 958 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 GOLGA6L7A0A1B0GV03 622 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 PRR23AA6NEV1 266 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 MSI1O43347 362 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 TBC1D4O60343 1298 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 GFPT2O94808 682 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 GJB6O95452 261 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 NFKBIAP25963 317 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 GTF2H1P32780 548 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 PNPLA4P41247 253 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 KDSRQ06136 332 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SNCBQ16143 134 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 KYAT1Q16773 422 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 EXOC3L4Q17RC7 722 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 GPRIN1Q7Z2K8 1008 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 CD302Q8IX05 232 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SCUBE3Q8IX30 993 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 CCDC33Q8N5R6 958 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 KBTBD7Q8WVZ9 684 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SLITRK1Q96PX8 696 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SIK2Q9H0K1 926 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SFMBT1Q9UHJ3 866 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 MTF2Q9Y483 593 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 NME7Q9Y5B8 376 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 PIGRP01833 764 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 AFPP02771 609 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 C4BPAP04003 597 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM200BP0CF97 657 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 LHX1P48742 406 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 VPS41P49754 854 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 TMED1Q13445 227 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 NFE2Q16621 373 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 ZACNQ401N2 412 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 ARHGAP15Q53QZ3 475 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 C4orf50Q6ZRC1 276 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 NEK10Q6ZWH5 1172 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SIX6OS1Q8N1H7 587 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC44A3Q8N4M1 653 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 NETO2Q8NC67 525 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 CLEC4CQ8WTT0 213 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SREK1Q8WXA9 508 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC35C1Q96A29 364 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 BCO2Q9BYV7 579 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 NDEL1Q9GZM8 345 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 ELOVL4Q9GZR5 314 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 NIF3L1Q9GZT8 377 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 WDR6Q9NNW5 1121 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 TRPM5Q9NZQ8 1165 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 KLF15Q9UIH9 416 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 HCN4Q9Y3Q4 1203 aa8.25□□□□□ -1.09
LIMCH1-219ENST00000514096 PCP4L1A6NKN8 68 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 NCK2O43639 380 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 ENDOD1O94919 500 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 LRPAP1P30533 357 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms