RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 SUFUQ9UMX1 484 aa11.14□□□□□ -0.63
PDLIM1-205ENST00000493949 PCDHGA5Q9Y5G8 931 aa11.14□□□□□ -0.63
PDLIM1-205ENST00000493949 PCDHA10Q9Y5I2 948 aa11.14□□□□□ -0.63
PDLIM1-205ENST00000493949 IGKV6-21A0A0C4DH24 114 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 DDX3XO00571 662 aaKnown RBP eCLIP11.13□□□□□ -0.634e-8■■■□□ 15.9
PDLIM1-205ENST00000493949 GIPC1O14908 333 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 KIAA0391O15091 583 aaKnown RBP11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 AXIN1O15169 862 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 MAPK13O15264 365 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 EDIL3O43854 480 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 XYLBO75191 536 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 FGGP02679 453 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 OATP04181 439 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 C8AP07357 584 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 SPINK2P20155 84 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 CTNNA2P26232 953 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 CIITAP33076 1130 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 OR1G1P47890 313 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 GALCP54803 685 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 ENPEPQ07075 957 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 TARBP2Q15633 366 aaKnown RBP11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 QPCTQ16769 361 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 PPM1LQ5SGD2 360 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 SEL1L2Q5TEA6 688 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 LIN9Q5TKA1 542 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 RNF43Q68DV7 783 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 FUT10Q6P4F1 479 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 CEP68Q76N32 757 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 RTL10Q7L3V2 364 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 JAMLQ86YT9 394 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 MAP4K3Q8IVH8 894 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 GLYCTKQ8IVS8 523 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 CRYGNQ8WXF5 182 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 FAM3CQ92520 227 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 B3GALT6Q96L58 329 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 RAB3IPQ96QF0 476 aaPredicted RBP11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 TRIM7Q9C029 511 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 NEUROG2Q9H2A3 272 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 NOD2Q9HC29 1040 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 CD248Q9HCU0 757 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 TUFT1Q9NNX1 390 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 AVENQ9NQS1 362 aaPredicted RBP11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 NRBP2Q9NSY0 501 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 WHRNQ9P202 907 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 BCCIPQ9P287 314 aaKnown RBP eCLIP11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 CNOT8Q9UFF9 292 aaKnown RBP11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 KIAA1024Q9UPX6 916 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 NEUROG3Q9Y4Z2 214 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 TRIP11Q15643 1979 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 ACACAQ13085 2346 aa11.13□□□□□ -0.63
PDLIM1-205ENST00000493949 BUB1BO60566 1050 aaPredicted RBP11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 HNRNPCL1O60812 293 aaKnown RBP11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 ZIC2O95409 532 aaPredicted RBP11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 TOP3BO95985 862 aaKnown RBP11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 GZMAP12544 262 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 CEACAM1P13688 526 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 CHN1P15882 459 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 FCARP24071 287 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 MCCD1P59942 119 aaPredicted RBP11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 PRKCEQ02156 737 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 CETN1Q12798 172 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 NR1H3Q13133 447 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 PABPC1LQ4VXU2 614 aaKnown RBP11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 UBXN11Q5T124 520 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 TANGO2Q6ICL3 276 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 HS2ST1Q7LGA3 356 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 CATSPER4Q7RTX7 472 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 BBOF1Q8ND07 529 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 IRF7Q92985 503 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 CLSTN3Q9BQT9 956 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 COLEC11Q9BWP8 271 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 AP1M1Q9BXS5 423 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 TRIM6Q9C030 488 aaPredicted RBP11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 RABEP2Q9H5N1 569 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 VPS45Q9NRW7 570 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 ANKFY1Q9P2R3 1169 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 PACSIN2Q9UNF0 486 aaPredicted RBP11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 ATP8A1Q9Y2Q0 1164 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 ARID2Q68CP9 1835 aa11.12□□□□□ -0.63
PDLIM1-205ENST00000493949 CACNA1EQ15878 2313 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CCDC163A0A0D9SF12 145 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 RASGRF2O14827 1237 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CCL16O15467 120 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CHMP2AO43633 222 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 SNX3O60493 162 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 GJB6O95452 261 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CAPNS1P04632 268 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CYP3A4P08684 503 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 MAPTP10636 758 aaKnown RBP11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 RPL17P18621 184 aaKnown RBP11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 SLC9A1P19634 815 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CSRP1P21291 193 aaKnown RBP11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CLNS1AP54105 237 aaKnown RBP11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 SLC18A1P54219 525 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 MRPS25P82663 173 aaKnown RBP11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 ARID5AQ03989 594 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CALCOCO2Q13137 446 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 PPP1R7Q15435 360 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 CCDC6Q16204 474 aa11.11□□□□□ -0.63
PDLIM1-205ENST00000493949 GALNTL6Q49A17 601 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms