RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 GFOD2Q3B7J2 385 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 TFAP2DQ7Z6R9 452 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 C12orf76Q8N812 135 aaPredicted RBP2.65□□□□□ -1.99
VPS13A-206ENST00000376646 TIFAQ96CG3 184 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 TM2D2Q9BX73 214 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 LRRC27Q9C0I9 530 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 EBF3Q9H4W6 596 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 VPS45Q9NRW7 570 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 DNAJB11Q9UBS4 358 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 NKX1-2Q9UD57 310 aaPredicted RBP2.65□□□□□ -1.99
VPS13A-206ENST00000376646 PCDHB2Q9Y5E7 798 aa2.65□□□□□ -1.99
VPS13A-206ENST00000376646 FRMPD2Q68DX3 1309 aaPredicted RBP2.64□□□□□ -1.99
VPS13A-206ENST00000376646 MT-ND5P03915 603 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 COPAP53621 1224 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 CACNB3P54284 484 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 EIF4A1P60842 406 aaKnown RBP2.64□□□□□ -1.99
VPS13A-206ENST00000376646 RAE1P78406 368 aaKnown RBP2.64□□□□□ -1.99
VPS13A-206ENST00000376646 POLD3Q15054 466 aaPredicted RBP2.64□□□□□ -1.99
VPS13A-206ENST00000376646 KLHDC7AQ5VTJ3 777 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 RUSC1-AS1Q66K80 236 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 DARS2Q6PI48 645 aaKnown RBP2.64□□□□□ -1.99
VPS13A-206ENST00000376646 MRPL10Q7Z7H8 261 aaKnown RBP2.64□□□□□ -1.99
VPS13A-206ENST00000376646 P3H2Q8IVL5 708 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 YAF2Q8IY57 180 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 CCDC146Q8IYE0 955 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 FSTL5Q8N475 847 aaPredicted RBP2.64□□□□□ -1.99
VPS13A-206ENST00000376646 SNX22Q96L94 193 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 TMEM79Q9BSE2 394 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 GJB4Q9NTQ9 266 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 CORO2BQ9UQ03 480 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 TTC3P53804 2025 aa2.64□□□□□ -1.99
VPS13A-206ENST00000376646 A0A087WZ62 844 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 CCDC194A0A1B0GVG4 234 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 M0R3H8 397 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 GOLIM4O00461 696 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 TLR2O60603 784 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 U2AF1L5P0DN76 240 aaPredicted RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 PSG1P11464 419 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 PHKG2P15735 406 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 ADRA1DP25100 572 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 RBL1P28749 1068 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 HTRA4P83105 476 aaPredicted RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 U2AF1Q01081 240 aaKnown RBP eCLIP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 ID2Q02363 134 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 LAMB3Q13751 1172 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 DENND2CQ68D51 928 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 VSTM1Q6UX27 236 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 ZNF517Q6ZMY9 492 aaPredicted RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 C16orf71Q8IYS4 520 aaPredicted RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 SAMD14Q8IZD0 417 aaPredicted RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 PNPLA1Q8N8W4 532 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 FAM71DQ8N9W8 422 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 PIGOQ8TEQ8 1089 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 WIPF2Q8TF74 440 aaPredicted RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 CAMK1GQ96NX5 476 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 DHX36Q9H2U1 1008 aaKnown RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 OBP2AQ9NY56 170 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 ZNF212Q9UDV6 495 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 STEAP1Q9UHE8 339 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 FZD4Q9ULV1 537 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 AQP7P3A6NL99 342 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 A8MVJ9 347 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 H3BNX3 289 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 MGEA5O60502 916 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 SNX2O60749 519 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 ZBED1O96006 694 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 TMEM225BP0DP42 221 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 SNHG28P0DPA3 235 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 CTSAP10619 480 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 PBX1P40424 430 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 MTAPQ13126 283 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 LEXMQ3ZCV2 418 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 MAP9Q49MG5 647 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 CHST15Q7LFX5 561 aaPredicted RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 ANKRD13BQ86YJ7 626 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 WASF1Q92558 559 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 VCPIP1Q96JH7 1222 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 SELENOOQ9BVL4 669 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 KRTAP1-5Q9BYS1 174 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 PI4KBQ9UBF8 816 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.63□□□□□ -1.99
VPS13A-206ENST00000376646 SQORQ9Y6N5 450 aa2.63□□□□□ -1.99
VPS13A-206ENST00000376646 ZMYM2Q9UBW7 1377 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 CCDC187A0A096LP49 1063 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 SLC22A23A1A5C7 686 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 MYMKA6NI61 221 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 CAND2O75155 1236 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 KRT18P05783 430 aaKnown RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 RHCEP18577 417 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 ATICP31939 592 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 CPA2P48052 419 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 WDR5P61964 334 aaKnown RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 TXNL4AP83876 142 aaKnown RBP2.62□□□□□ -1.99
VPS13A-206ENST00000376646 RHDQ02161 417 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 STIM1Q13586 685 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 SLC9C1Q4G0N8 1177 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 CYB5RLQ6IPT4 315 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 KSR2Q6VAB6 950 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 ADAMTS15Q8TE58 950 aa2.62□□□□□ -1.99
VPS13A-206ENST00000376646 SMCR8Q8TEV9 937 aaPredicted RBP2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms