RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 POTEDQ86YR6 584 aa15.94■□□□□ 0.14
VPS13A-206ENST00000376646 AEBP2Q6ZN18 517 aaPredicted RBP15□□□□□ -0.01
VPS13A-206ENST00000376646 CHIC1Q5VXU3 224 aa14.7□□□□□ -0.06
VPS13A-206ENST00000376646 SENP3Q9H4L4 574 aaPredicted RBP13.78□□□□□ -0.2
VPS13A-206ENST00000376646 MSH5O43196 834 aa13.2□□□□□ -0.3
VPS13A-206ENST00000376646 PHF23Q9BUL5 403 aaPredicted RBP12.99□□□□□ -0.33
VPS13A-206ENST00000376646 FOXD1Q16676 465 aa12.66□□□□□ -0.38
VPS13A-206ENST00000376646 CACNB1Q02641 598 aaPredicted RBP12.36□□□□□ -0.43
VPS13A-206ENST00000376646 POTEHQ6S545 545 aa12.18□□□□□ -0.46
VPS13A-206ENST00000376646 PIAS4Q8N2W9 510 aaPredicted RBP11.45□□□□□ -0.58
VPS13A-206ENST00000376646 PLPPR3Q6T4P5 718 aa11.39□□□□□ -0.59
VPS13A-206ENST00000376646 PPP6R1Q9UPN7 881 aa11.14□□□□□ -0.63
VPS13A-206ENST00000376646 ADRA2BP18089 450 aa11.11□□□□□ -0.63
VPS13A-206ENST00000376646 PLSCR2Q9NRY7 297 aa10.84□□□□□ -0.67
VPS13A-206ENST00000376646 C1QBPQ07021 282 aaKnown RBP10.76□□□□□ -0.69
VPS13A-206ENST00000376646 RNF39Q9H2S5 420 aa10.75□□□□□ -0.69
VPS13A-206ENST00000376646 SP7Q8TDD2 431 aaPredicted RBP10.51□□□□□ -0.73
VPS13A-206ENST00000376646 DMRT2Q9Y5R5 561 aa10.48□□□□□ -0.73
VPS13A-206ENST00000376646 MAPK8IP2Q13387 824 aaPredicted RBP10.17□□□□□ -0.78
VPS13A-206ENST00000376646 PPP4R3CPQ6ZMV5 832 aa10.05□□□□□ -0.8
VPS13A-206ENST00000376646 SCAF1Q9H7N4 1312 aaKnown RBP10.02□□□□□ -0.81
VPS13A-206ENST00000376646 DCAF8L1A6NGE4 600 aa9.97□□□□□ -0.81
VPS13A-206ENST00000376646 PCDH10Q9P2E7 1040 aa9.86□□□□□ -0.83
VPS13A-206ENST00000376646 DNAJC5BQ9UF47 199 aa9.85□□□□□ -0.83
VPS13A-206ENST00000376646 LHX8Q68G74 356 aa9.82□□□□□ -0.84
VPS13A-206ENST00000376646 CNKSR2Q8WXI2 1034 aa9.77□□□□□ -0.84
VPS13A-206ENST00000376646 HOXD11P31277 338 aaPredicted RBP9.66□□□□□ -0.86
VPS13A-206ENST00000376646 NCBP3Q53F19 620 aaKnown RBP9.66□□□□□ -0.86
VPS13A-206ENST00000376646 KCNA4P22459 653 aa9.65□□□□□ -0.87
VPS13A-206ENST00000376646 CHRDL2Q6WN34 429 aa9.64□□□□□ -0.87
VPS13A-206ENST00000376646 RNF216Q9NWF9 866 aaPredicted RBP9.63□□□□□ -0.87
VPS13A-206ENST00000376646 NPM3O75607 178 aaKnown RBP9.61□□□□□ -0.87
VPS13A-206ENST00000376646 RBM42Q9BTD8 480 aaKnown RBP9.43□□□□□ -0.9
VPS13A-206ENST00000376646 HAX1O00165 279 aa9.37□□□□□ -0.91
VPS13A-206ENST00000376646 DSG3P32926 999 aa9.29□□□□□ -0.92
VPS13A-206ENST00000376646 POTEMA6NI47 508 aa9.28□□□□□ -0.92
VPS13A-206ENST00000376646 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.24□□□□□ -0.931e-6■□□□□ 8.7
VPS13A-206ENST00000376646 POTEGQ6S5H5 508 aa9.17□□□□□ -0.94
VPS13A-206ENST00000376646 SLC4A2P04920 1241 aa9.14□□□□□ -0.95
VPS13A-206ENST00000376646 SLC4A1APQ9BWU0 796 aaKnown RBP9.1□□□□□ -0.95
VPS13A-206ENST00000376646 U3KPZ7 1027 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-206ENST00000376646 SPINK5Q9NQ38 1064 aaPredicted RBP8.93□□□□□ -0.98
VPS13A-206ENST00000376646 CAPN15O75808 1086 aa8.92□□□□□ -0.98
VPS13A-206ENST00000376646 ZBTB22O15209 634 aa8.9□□□□□ -0.98
VPS13A-206ENST00000376646 PIP4P2Q8N4L2 257 aa8.87□□□□□ -0.99
VPS13A-206ENST00000376646 FOXD4L1Q9NU39 408 aa8.86□□□□□ -0.99
VPS13A-206ENST00000376646 MYCNP04198 464 aaPredicted RBP8.82□□□□□ -1
VPS13A-206ENST00000376646 TRHP20396 242 aaPredicted RBP8.79□□□□□ -1
VPS13A-206ENST00000376646 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.78□□□□□ -1
VPS13A-206ENST00000376646 HNRNPUL2Q1KMD3 747 aaKnown RBP8.78□□□□□ -1
VPS13A-206ENST00000376646 SAMD1Q6SPF0 538 aaPredicted RBP8.78□□□□□ -1
VPS13A-206ENST00000376646 ABCB7O75027 752 aa8.73□□□□□ -1.01
VPS13A-206ENST00000376646 ATF5Q9Y2D1 282 aaPredicted RBP8.72□□□□□ -1.01
VPS13A-206ENST00000376646 GABBR2O75899 941 aa8.71□□□□□ -1.01
VPS13A-206ENST00000376646 APLP2Q06481 763 aa8.71□□□□□ -1.02
VPS13A-206ENST00000376646 ZNF219Q9P2Y4 722 aaPredicted RBP8.7□□□□□ -1.02
VPS13A-206ENST00000376646 EHMT2Q96KQ7 1210 aa8.68□□□□□ -1.02
VPS13A-206ENST00000376646 CSRNP3Q8WYN3 585 aa8.64□□□□□ -1.03
VPS13A-206ENST00000376646 CLCN6P51797 869 aa8.63□□□□□ -1.03
VPS13A-206ENST00000376646 EVX2Q03828 476 aa8.62□□□□□ -1.03
VPS13A-206ENST00000376646 FXR2P51116 673 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS13A-206ENST00000376646 AKT1S1Q96B36 256 aa8.61□□□□□ -1.03
VPS13A-206ENST00000376646 POLA2Q14181 598 aa8.59□□□□□ -1.03
VPS13A-206ENST00000376646 ATXN8OSP0DMR3 200 aa8.5□□□□□ -1.05
VPS13A-206ENST00000376646 OTUD5Q96G74 571 aa8.46□□□□□ -1.06
VPS13A-206ENST00000376646 CDAN1Q8IWY9 1227 aa8.45□□□□□ -1.06
VPS13A-206ENST00000376646 C19orf67A6NJJ6 358 aa8.44□□□□□ -1.06
VPS13A-206ENST00000376646 MMRN1Q13201 1228 aa8.38□□□□□ -1.07
VPS13A-206ENST00000376646 OSCARQ8IYS5 282 aa8.33□□□□□ -1.08
VPS13A-206ENST00000376646 ZBTB12Q9Y330 459 aaPredicted RBP8.32□□□□□ -1.08
VPS13A-206ENST00000376646 MKRN4PQ13434 485 aaPredicted RBP8.3□□□□□ -1.08
VPS13A-206ENST00000376646 MAMSTRQ6ZN01 415 aa8.29□□□□□ -1.08
VPS13A-206ENST00000376646 POTEIP0CG38 1075 aa8.27□□□□□ -1.09
VPS13A-206ENST00000376646 REM2Q8IYK8 340 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-206ENST00000376646 DCBLD2Q96PD2 775 aa8.25□□□□□ -1.09
VPS13A-206ENST00000376646 FBLN2P98095 1184 aa8.24□□□□□ -1.09
VPS13A-206ENST00000376646 FAM163AQ96GL9 167 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-206ENST00000376646 SPNS2Q8IVW8 549 aa8.17□□□□□ -1.1
VPS13A-206ENST00000376646 SPDYE2BA6NHP3 402 aa8.12□□□□□ -1.11
VPS13A-206ENST00000376646 SPDYE6P0CI01 402 aa8.12□□□□□ -1.11
VPS13A-206ENST00000376646 SPDYE2Q495Y8 402 aa8.12□□□□□ -1.11
VPS13A-206ENST00000376646 PITPNM1O00562 1244 aa8.1□□□□□ -1.11
VPS13A-206ENST00000376646 ZNF692Q9BU19 519 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-206ENST00000376646 SSUH2Q9Y2M2 353 aa8.06□□□□□ -1.12
VPS13A-206ENST00000376646 LCE2DQ5TA82 110 aaPredicted RBP8.04□□□□□ -1.12
VPS13A-206ENST00000376646 PABPN1Q86U42 306 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS13A-206ENST00000376646 CLEC11AQ9Y240 323 aa7.99□□□□□ -1.13
VPS13A-206ENST00000376646 SPDYE4A6NLX3 237 aa7.98□□□□□ -1.13
VPS13A-206ENST00000376646 PRKAR2AP13861 404 aaKnown RBP7.96□□□□□ -1.14
VPS13A-206ENST00000376646 SPDYE1Q8NFV5 336 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-206ENST00000376646 SCUBE2Q9NQ36 999 aa7.92□□□□□ -1.14
VPS13A-206ENST00000376646 CHADLQ6NUI6 762 aa7.85□□□□□ -1.15
VPS13A-206ENST00000376646 PRR29P0C7W0 189 aa7.84□□□□□ -1.15
VPS13A-206ENST00000376646 POTEB2H3BUK9 544 aa7.83□□□□□ -1.16
VPS13A-206ENST00000376646 FKBP8Q14318 412 aa7.82□□□□□ -1.16
VPS13A-206ENST00000376646 PROM2Q8N271 834 aa7.78□□□□□ -1.16
VPS13A-206ENST00000376646 STAG3Q9UJ98 1225 aa7.73□□□□□ -1.17
VPS13A-206ENST00000376646 CREBZFQ9NS37 354 aa7.72□□□□□ -1.17
VPS13A-206ENST00000376646 FARP1Q9Y4F1 1045 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-206ENST00000376646 CD44P16070 742 aaKnown RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms