RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KCTD1Q719H9 257 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SYNPOQ8N3V7 929 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PCDH19Q8TAB3 1148 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 MFSD3Q96ES6 412 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 BORCS8Q96FH0 119 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SIPA1Q96FS4 1042 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 MSANTD3Q96H12 275 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM169Q96HH4 297 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 USP28Q96RU2 1077 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 MMP19Q99542 508 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PLEKHA1Q9HB21 404 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ATP8A2Q9NTI2 1148 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TBC1D14Q9P2M4 693 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 GULP1Q9UBP9 304 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TUBGCP4Q9UGJ1 667 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CNOT11Q9UKZ1 510 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SMARCA4P51532 1647 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 H3BRB1 525 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 HSPA12AO43301 675 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 MYL12AP19105 171 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 UQCRC1P31930 480 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF41P51814 821 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 IL18Q14116 193 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 PPP2R5BQ15173 497 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 EPHA7Q15375 998 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 OGFRL1Q5TC84 451 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SMYD5Q6GMV2 418 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 EFL1Q7Z2Z2 1120 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF571Q7Z3V5 609 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 COMTD1Q86VU5 262 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CARNMT1Q8N4J0 409 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CNTD1Q8N815 330 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 GALNT6Q8NCL4 622 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 C11orf65Q8NCR3 313 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 BBS1Q8NFJ9 593 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF563Q8TA94 476 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 LRRC4BQ9NT99 713 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CROTQ9UKG9 612 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ABHD14A-ACY1A0A1B0GW23 586 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 E7ESA3 106 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 JAK2O60674 1132 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SNCGO76070 127 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TJP3O95049 919 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF682O95780 498 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SLC7A5Q01650 507 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 KCNH2Q12809 1159 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 MYBPC3Q14896 1274 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SURF1Q15526 300 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 UBE2R2Q712K3 238 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ADSSL1Q8N142 457 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF808Q8N4W9 903 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM161BQ8NDZ6 487 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 TCTEX1D2Q8WW35 142 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 SNX21Q969T3 373 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CEP44Q9C0F1 390 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 DHX35Q9H5Z1 703 aaKnown RBP4.77□□□□□ -1.65
SCN1A-202ENST00000375405 NR2E3Q9Y5X4 410 aa4.77□□□□□ -1.65
SCN1A-202ENST00000375405 CC2D2AQ9P2K1 1620 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 HHLA1C9JL84 531 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ZBTB22O15209 634 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 WFS1O76024 890 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CYP1A2P05177 515 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CKMP06732 381 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 C6orf222P0C671 652 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ATP6V1B1P15313 513 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CXCR2P25025 360 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CASRP41180 1078 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TPI1P60174 286 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PITPNAQ00169 270 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FNDC3BQ53EP0 1204 aaKnown RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FAM76BQ5HYJ3 339 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 NBPF12Q5TAG4 269 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 KDELC1Q6UW63 502 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FAM228AQ86W67 206 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 RTKN2Q8IZC4 609 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 RDM1Q8NG50 284 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FAM136AQ96C01 138 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 WNK4Q96J92 1243 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 EPB41L4BQ9H329 900 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 METTL5Q9NRN9 209 aaKnown RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TBC1D23Q9NUY8 699 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 RNF181Q9P0P0 153 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PYCARDQ9ULZ3 195 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF175Q9Y473 711 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SH2D7A6NKC9 451 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SLC27A2O14975 620 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SCAMP1O15126 338 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SEMA3DO95025 777 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 IFNA6P05013 189 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TUBG1P23258 451 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 RPS6KB1P23443 525 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PTPN7P35236 360 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 HALP42357 657 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 NPTX2P47972 431 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 USP14P54578 494 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM62Q0P6H9 643 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ADAM9Q13443 819 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SNX17Q15036 470 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 C10orf120Q5SQS8 335 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 COPS6Q7L5N1 327 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms