RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ARHGEF19Q8IW93 802 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 PGBD3Q8N328 593 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 RFT1Q96AA3 541 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 ROPN1LQ96C74 230 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 CRELD1Q96HD1 420 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 TNIP3Q96KP6 325 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 Q96MT0 163 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 CLEC4MQ9H2X3 399 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-201ENST00000303395 KLHL28Q9NXS3 571 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 COQ6Q9Y2Z9 468 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 PCDHA3Q9Y5H8 950 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF804BA4D1E1 1349 aa5.4□□□□□ -1.55
SCN1A-201ENST00000303395 LYPLA2O95372 231 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 NCF2P19878 526 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 GALCP54803 685 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 CAV3P56539 151 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 GPR162Q16538 588 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 INTS6LQ5JSJ4 861 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 CLYBLQ8N0X4 340 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 RBM15BQ8NDT2 890 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 ART4Q93070 314 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 APOL2Q9BQE5 337 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SUCOQ9UBS9 1254 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SLC9A2Q9UBY0 812 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 MKLN1Q9UL63 735 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 ZBTB1Q9Y2K1 713 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 NDUFAF1Q9Y375 327 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 APOL1O14791 398 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 BNIP3LO60238 219 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 FTCDO95954 541 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 NPR3P17342 541 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 FASP25445 335 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SCNN1AP37088 669 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 GP5P40197 560 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SLC26A3P40879 764 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 CRKP46108 304 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SERPINH1P50454 418 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 MTTPP55157 894 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SMIM11AP58511 58 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 TFDP3Q5H9I0 405 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 BROXQ5VW32 411 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 UNC5CLQ8IV45 518 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 GOLPH3Q9H4A6 298 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 ZSWIM5Q9P217 1185 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 GNPTGQ9UJJ9 305 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 BTN3A2P78410 334 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 DDB1Q16531 1140 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 LIN52Q52LA3 116 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 TNFAIP8L3Q5GJ75 292 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF438Q7Z4V0 828 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 DEPDC4Q8N2C3 294 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 OXNAD1Q96HP4 312 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 CDK5RAP1Q96SZ6 601 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 HOPXQ9BPY8 73 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 HPS4Q9NQG7 708 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 TRIM10Q9UDY6 481 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 VAV3Q9UKW4 847 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 PRR12Q9ULL5 1215 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 B2RBV5 119 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 POC1B-GALNT4F8VUJ3 575 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 PI4K2BG5E9Z4 385 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 H3BMM5 538 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 ENTPD3O75355 529 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 ACSL3O95573 720 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 FGRP09769 529 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 CCND2P30279 289 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 RAB2AP61019 212 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 YWHAZP63104 245 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 CRY1Q16526 586 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 EFHC2Q5JST6 749 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 INTS11Q5TA45 600 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 RC3H1Q5TC82 1133 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SLFN13Q68D06 897 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 ERAP2Q6P179 960 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 NEK5Q6P3R8 708 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 GALNT18Q6P9A2 607 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 PIGWQ7Z7B1 504 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 OOSP2Q86WS3 158 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 BLZF1Q9H2G9 400 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 RMND5AQ9H871 391 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 EIF2B3Q9NR50 452 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SPACA6W5XKT8 324 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 TESPA1A2RU30 521 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 RIPK2O43353 540 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 MYCP01106 439 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 NPPAP01160 153 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 GPIP06744 558 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 HSD3B1P14060 373 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 UQCRBP14927 111 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 DRD4P21917 467 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 PSMA2P25787 234 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 QARSP47897 775 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 ADARP55265 1226 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 CYP27A1Q02318 531 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 NSUN2Q08J23 767 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 SF3B3Q15393 1217 aaKnown RBP5.39□□□□□ -1.55
SCN1A-201ENST00000303395 CYP1B1Q16678 543 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 PPP1R15BQ5SWA1 713 aa5.39□□□□□ -1.55
SCN1A-201ENST00000303395 AGAP9Q5VTM2 703 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms