RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 FAM172AQ8WUF8 416 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 ZNF296Q8WUU4 475 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 PIK3R5Q8WYR1 880 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 APBB2Q92870 758 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 ZBTB9Q96C00 473 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 HERPUD2Q9BSE4 406 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 PHACTR1Q9C0D0 580 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.18□□□□□ -0.34e-7■■□□□ 13.4
SHMT2-229ENST00000557348 ELAC1Q9H777 363 aaKnown RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 PNPLA8Q9NP80 782 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 NGRNQ9NPE2 291 aaKnown RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 R3HDM2Q9Y2K5 976 aaKnown RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 NEU2Q9Y3R4 380 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 TRIP11Q15643 1979 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 CFAP69A5D8W1 941 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 MEIS3P2A8K0S8 358 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 C9IYK1 514 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 TMEM189-UBE2V1I3L0A0 370 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 CST8O60676 142 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 B3GAT3O94766 335 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 KRT10P13645 584 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 STIP1P31948 543 aaKnown RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 MATKP42679 507 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 CDH6P55285 790 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 FAM189BP81408 668 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 MRPS5P82675 430 aaKnown RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 OASLQ15646 514 aaKnown RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 MDH1BQ5I0G3 518 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 RFX6Q8HWS3 928 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 SCML4Q8N228 414 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 HSPH1Q92598 858 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 SUSD3Q96L08 255 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 C11orf84Q9BUA3 381 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 CALN1Q9BXU9 219 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 STMN4Q9H169 189 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 EBF2Q9HAK2 575 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 CNGB3Q9NQW8 809 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 KRT82Q9NSB4 513 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 KLHL11Q9NVR0 708 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 RCOR3Q9P2K3 495 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 PCSK1NQ9UHG2 260 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 ANAPC5Q9UJX4 755 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 ATP8A1Q9Y2Q0 1164 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 CASTOR2A6NHX0 329 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 PITPNM1O00562 1244 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 HOXA2O43364 376 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 LCP1P13796 627 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 IVDP26440 423 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 KLRC2P26717 231 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 NOS2P35228 1153 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 YWHAZP63104 245 aaKnown RBP13.17□□□□□ -0.3
SHMT2-229ENST00000557348 TSPY1Q01534 308 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 GUCY1A3Q02108 690 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 SMTNL2Q2TAL5 461 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 C11orf91Q3C1V1 193 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 SLC25A52Q3SY17 297 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 ERMARDQ5T6L9 678 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 COL13A1Q5TAT6 717 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-229ENST00000557348 TXNRD3NBQ6F5E7 133 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 C4orf22Q6V702 233 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 CLEC20AQ6ZU45 233 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 LRRC8DQ7L1W4 858 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 FAM35AQ86V20 835 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 RELL1Q8IUW5 271 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 CFAP61Q8NHU2 1237 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 IRGQQ8WZA9 623 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 HAUS1Q96CS2 278 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 CFAP57Q96MR6 1250 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 CCDC134Q9H6E4 229 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 RNF19AQ9NV58 838 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 TMEM161AQ9NX61 479 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 MIOSQ9NXC5 875 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 DNPEPQ9ULA0 475 aa13.17□□□□□ -0.3
SHMT2-229ENST00000557348 POMCP01189 267 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 TKTP29401 623 aaKnown RBP13.16□□□□□ -0.3
SHMT2-229ENST00000557348 ARSEP51690 589 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 ZNF135P52742 658 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-229ENST00000557348 ADIGQ0VDE8 80 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 MORF4L2Q15014 288 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 DPYSL2Q16555 572 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 CDO1Q16878 200 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 CCDC38Q502W7 563 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 TIGD5Q53EQ6 642 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 NOMO2Q5JPE7 1267 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 KCNT1Q5JUK3 1230 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 SCYL2Q6P3W7 929 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 RHBDF2Q6PJF5 856 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 BZW1Q7L1Q6 419 aaKnown RBP13.16□□□□□ -0.3
SHMT2-229ENST00000557348 ACTL9Q8TC94 416 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 CCT6BQ92526 530 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 KHSRPQ92945 711 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHMT2-229ENST00000557348 SEC16BQ96JE7 1060 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 RNF157Q96PX1 679 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 SLC9A7Q96T83 725 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 TMEM109Q9BVC6 243 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 TRPV6Q9H1D0 765 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 POPDC2Q9HBU9 364 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 CRTAC1Q9NQ79 661 aa13.16□□□□□ -0.3
SHMT2-229ENST00000557348 PCDHB8Q9UN66 801 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms