RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 WBP2Q969T9 261 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 DHTKD1Q96HY7 919 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 HNRNPABQ99729 332 aaKnown RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 P2RY13Q9BPV8 354 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 HINFPQ9BQA5 517 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 CSNK1G1Q9HCP0 422 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 CISHQ9NSE2 258 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 IL37Q9NZH6 218 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 ARMCX3Q9UH62 379 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 CTNND2Q9UQB3 1225 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 ANTXRLA6NF34 631 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 CHURC1-FNTBB4DL54 471 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 HHLA1C9JL84 531 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 OLFM2O95897 454 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 IRF1P10914 325 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 TCF3P15923 654 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 PFKLP17858 780 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 ACO1P21399 889 aaKnown RBP11.26□□□□□ -0.61
COL6A3-214ENST00000493608 FNTBP49356 437 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 SMCPP49901 116 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-214ENST00000493608 PDE6CP51160 858 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 RAD23BP54727 409 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 AMPD2Q01433 879 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 NR1H3Q13133 447 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 SRSF5Q13243 272 aaKnown RBP11.26□□□□□ -0.61
COL6A3-214ENST00000493608 MORC3Q14149 939 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 CAMK4Q16566 473 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 LPAL2Q16609 132 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 CCDC40Q4G0X9 1142 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 ADGRG2Q8IZP9 1017 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 SLC4A11Q8NBS3 891 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 ZBTB44Q8NCP5 570 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 PDZD8Q8NEN9 1154 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 OVCA2Q8WZ82 227 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 NELL1Q92832 810 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 SLC35C1Q96A29 364 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 ZNF775Q96BV0 537 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-214ENST00000493608 TMEM176AQ96HP8 235 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 SEMA4AQ9H3S1 761 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 DACH1Q9UI36 760 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 NUDT5Q9UKK9 219 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 PCDHGA2Q9Y5H1 932 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 GPR179Q6PRD1 2367 aa11.26□□□□□ -0.61
COL6A3-214ENST00000493608 MYO18AQ92614 2054 aaKnown RBP11.26□□□□□ -0.61
COL6A3-214ENST00000493608 RALGAPA1Q6GYQ0 2036 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 FAM92AA1XBS5 289 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 K7ESF4 209 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 CYP26A1O43174 497 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 LILRB5O75023 590 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 NFATC1O95644 943 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 CYP17A1P05093 508 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 ZDHHC11BP0C7U3 371 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 TRIM21P19474 475 aaKnown RBP11.25□□□□□ -0.61
COL6A3-214ENST00000493608 SLC6A11P48066 632 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 PXNP49023 591 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-214ENST00000493608 NRLP54845 237 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 PPP2R5DQ14738 602 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 SNX30Q5VWJ9 437 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 TTI2Q6NXR4 508 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 EZH1Q92800 747 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-214ENST00000493608 CD101Q93033 1021 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 IER2Q9BTL4 223 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 GTPBP4Q9BZE4 634 aaKnown RBP11.25□□□□□ -0.61
COL6A3-214ENST00000493608 NACA2Q9H009 215 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 FBXO44Q9H4M3 255 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 NMUR1Q9HB89 426 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 COMMD8Q9NX08 183 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 OSER1Q9NX31 292 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 CHMP5Q9NZZ3 219 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 COQ4Q9Y3A0 265 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 OTOGLQ3ZCN5 2332 aa11.25□□□□□ -0.61
COL6A3-214ENST00000493608 SPTBN4Q9H254 2564 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 GVINP1Q7Z2Y8 2422 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 A0A1W2PQH9 124 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 TTC24A2A3L6 582 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-214ENST00000493608 MDM4O15151 490 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 TLR5O60602 858 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 CALCAP01258 141 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 DRD1P21728 446 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 OPRD1P41143 372 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 FMO5P49326 533 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 SEC13P55735 322 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 CUL2Q13617 745 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 DHCR24Q15392 516 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 GAB4Q2WGN9 574 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 RHBDF2Q6PJF5 856 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 PRR23BQ6ZRT6 265 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 SFTPA1Q8IWL2 248 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 KIAA2013Q8IYS2 634 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 SYNPOQ8N3V7 929 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 CEP63Q96MT8 703 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 SRRTQ9BXP5 876 aaKnown RBP11.24□□□□□ -0.61
COL6A3-214ENST00000493608 DUSP16Q9BY84 665 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 FAM126AQ9BYI3 521 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-214ENST00000493608 METTL14Q9HCE5 456 aaKnown RBP11.24□□□□□ -0.61
COL6A3-214ENST00000493608 TLR8Q9NR97 1041 aaKnown RBP11.24□□□□□ -0.61
COL6A3-214ENST00000493608 SCML2Q9UQR0 700 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 SH3BP1Q9Y3L3 701 aa11.24□□□□□ -0.61
COL6A3-214ENST00000493608 EML5Q05BV3 1969 aa11.23□□□□□ -0.61
COL6A3-214ENST00000493608 TULP2O00295 520 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms