RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 HOXA10P31260 410 aaPredicted RBP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 SOX10P56693 466 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 ZNF662Q6ZS27 426 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 PLEKHH3Q7Z736 793 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 DDX53Q86TM3 631 aaKnown RBP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 ACTL9Q8TC94 416 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 ELMO3Q96BJ8 720 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 PPP1R36Q96LQ0 422 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 PNMA5Q96PV4 448 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 ZNF229Q9UJW7 825 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 TRHDEQ9UKU6 1024 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 SUPT7LO94864 414 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 VCAM1P19320 739 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 AXLP30530 894 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 RAB27AP51159 221 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 SFSWAPQ12872 951 aaKnown RBP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 TMEM132BQ14DG7 1078 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 ACOT1Q86TX2 421 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 MSL3Q8N5Y2 521 aaKnown RBP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 RXFP2Q8WXD0 754 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 MRIQ9BWK5 157 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 GLIS2Q9BZE0 524 aaPredicted RBP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 CXorf56Q9H5V9 222 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 OSGEPQ9NPF4 335 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 WWOXQ9NZC7 414 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 USP20Q9Y2K6 914 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 NRXN3Q9Y4C0 1643 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 DLG5Q8TDM6 1919 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 HACD1B0YJ81 288 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 CYB561D2O14569 222 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 MAP3K13O43283 966 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 PGK2P07205 417 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 CPA3P15088 417 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 TGFB2P61812 414 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 KCNMA1Q12791 1236 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 MPP3Q13368 585 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 CCDC153Q494R4 210 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 WASHC2DQ5SRD0 308 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 MTMR8Q96EF0 704 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 DUSP9Q99956 384 aaKnown RBP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 INTS13Q9NVM9 706 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 PCDHB7Q9Y5E2 793 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 SNTNA6NMZ2 147 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 FCGRTP55899 365 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 DGKZQ13574 1117 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 DENND5BQ6ZUT9 1274 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 AMIGO3Q86WK7 504 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 VAT1Q99536 393 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 NDEL1Q9GZM8 345 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 H2AFY2Q9P0M6 372 aaPredicted RBP12.11□□□□□ -0.47
COL9A1-202ENST00000357250 VTI1BQ9UEU0 232 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 FAM198AQ9UFP1 575 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 ANKRD26Q9UPS8 1709 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 RIPK2O43353 540 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 B3GAT3O94766 335 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 GLI1P08151 1106 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 EIF4BP23588 611 aaKnown RBP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 TARSP26639 723 aaKnown RBP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 MYL6P60660 151 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 OTOP1Q7RTM1 612 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 KCNK18Q7Z418 384 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 BRSK2Q8IWQ3 736 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 TUBGCP3Q96CW5 907 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 ASCC2Q9H1I8 757 aaPredicted RBP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 HNRNPCP07910 306 aaKnown RBP eCLIP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 TNFRSF8P28908 595 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 CDK7P50613 346 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 HPCAP84074 193 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 CHRNB3Q05901 458 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 CDH18Q13634 790 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 CRYMQ14894 314 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 PGM5Q15124 567 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 LRRC36Q1X8D7 754 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 FBXO47Q5MNV8 452 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 TTC33Q6PID6 262 aaPredicted RBP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 C15orf52Q6ZUT6 534 aaKnown RBP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 SLC47A2Q86VL8 602 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 TLR10Q9BXR5 811 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 MMADHCQ9H3L0 296 aaPredicted RBP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 EPS8L2Q9H6S3 715 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 RNF112Q9ULX5 631 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 PCDHGC5Q9Y5F6 944 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 MYO1GB0I1T2 1018 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 CXCL11O14625 94 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 ARIH2O95376 493 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 THP07101 528 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 ITGALP20701 1170 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 DSG3P32926 999 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 NPY2RP49146 381 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 CLK1P49759 484 aaKnown RBP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 FOXD4Q12950 439 aaPredicted RBP12.1□□□□□ -0.47
COL9A1-202ENST00000357250 PRKAA1Q13131 559 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 TP53BP2Q13625 1128 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 RCN1Q15293 331 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 TMC3Q7Z5M5 1100 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 MAP4K3Q8IVH8 894 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 ZNF606Q8WXB4 792 aa12.1□□□□□ -0.47
COL9A1-202ENST00000357250 ZC4H2Q9NQZ6 224 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms