RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 C1orf54Q8WWF1 131 aa13.37□□□□□ -0.27
CLK3-201ENST00000345005 ATXN2LQ8WWM7 1075 aaKnown RBP13.37□□□□□ -0.27
CLK3-201ENST00000345005 SLCO2A1Q92959 643 aa13.37□□□□□ -0.27
CLK3-201ENST00000345005 DCLK3Q9C098 648 aa13.37□□□□□ -0.27
CLK3-201ENST00000345005 ZWILCHQ9H900 591 aa13.37□□□□□ -0.27
CLK3-201ENST00000345005 EFR3BQ9Y2G0 817 aa13.37□□□□□ -0.27
CLK3-201ENST00000345005 PI4K2BG5E9Z4 385 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 RASGRF2O14827 1237 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 SUN1O94901 812 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 ATP6V1G2O95670 118 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 ECEL1O95672 775 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 TRUB2O95900 331 aaKnown RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 TKTP29401 623 aaKnown RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 SDC4P31431 198 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 PPP1R7Q15435 360 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 ZKSCAN8Q15776 578 aaPredicted RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 CCDC14Q49A88 953 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 PLEKHG4Q58EX7 1191 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 TNFAIP8L3Q5GJ75 292 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 EFHC1Q5JVL4 640 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 TXNRD3NBQ6F5E7 133 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 PAQR9Q6ZVX9 377 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 SLC26A9Q7LBE3 791 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 LINC01599Q8WXQ3 324 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 KCTD13Q8WZ19 329 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 N4BP2L2Q92802 583 aaPredicted RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 KHSRPQ92945 711 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLK3-201ENST00000345005 PIWIL1Q96J94 861 aaKnown RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 SELENOSQ9BQE4 189 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 ACBD6Q9BR61 282 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 HERPUD2Q9BSE4 406 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 TRIM51Q9BSJ1 452 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 ELAC1Q9H777 363 aaKnown RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 CRTAC1Q9NQ79 661 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 KLHL11Q9NVR0 708 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 TMEM161AQ9NX61 479 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 USP18Q9UMW8 372 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 TIMM13Q9Y5L4 95 aaPredicted RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 TANC1Q9C0D5 1861 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 PTPRDP23468 1912 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 TTC3P53804 2025 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 SCN5AQ14524 2016 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 TET1Q8NFU7 2136 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 CLDN5O00501 218 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 NBNO60934 754 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 GRAP2O75791 330 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 MYCP01106 439 aaPredicted RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 FAM200BP0CF97 657 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 LCP1P13796 627 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 KDELR1P24390 212 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 IL1R2P27930 398 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 CDKN2BP42772 138 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 PLTPP55058 493 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 CAV1Q03135 178 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 SNX1Q13596 522 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 CLLU1OSQ5K130 101 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 KIAA0319Q5VV43 1072 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 CD300LGQ6UXG3 332 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 PIGZQ86VD9 579 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 KCTD6Q8NC69 237 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 CMASQ8NFW8 434 aaPredicted RBP13.36□□□□□ -0.27
CLK3-201ENST00000345005 ATL2Q8NHH9 583 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 RSPH1Q8WYR4 309 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 SEPT8Q92599 483 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 APBB2Q92870 758 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 SUSD3Q96L08 255 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 SERPINB12Q96P63 405 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 B3GNT5Q9BYG0 378 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 NOD2Q9HC29 1040 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 PCSK1NQ9UHG2 260 aa13.36□□□□□ -0.27
CLK3-201ENST00000345005 hCG_1818297A0A087WSY0 165 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 ENPP3O14638 875 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 PRPSAP2O60256 369 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 TYMPP19971 482 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 PTPN9P43378 593 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 BRCC3P46736 316 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 KCNJ1P48048 391 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 DSC1Q08554 894 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 CALCOCO2Q13137 446 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 SLC29A2Q14542 456 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 TRNP1Q6NT89 227 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 HIBCHQ6NVY1 386 aaPredicted RBP13.35□□□□□ -0.27
CLK3-201ENST00000345005 CLEC20AQ6ZU45 233 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 THEM5Q8N1Q8 247 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 GRAMD1AQ96CP6 724 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 FAM193BQ96PV7 902 aaPredicted RBP13.35□□□□□ -0.27
CLK3-201ENST00000345005 CHST7Q9NS84 486 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 PCDHB7Q9Y5E2 793 aa13.35□□□□□ -0.27
CLK3-201ENST00000345005 MYBPHLA2RUH7 354 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 C3orf70A6NLC5 250 aaPredicted RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 I3L4J1 428 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 PARNO95453 639 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 GAS8O95995 478 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 VIMP08670 466 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 KRT10P13645 584 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 CCND1P24385 295 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 GBP2P32456 591 aaPredicted RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 RNASELQ05823 741 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 TAF5Q15542 800 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 TAZQ16635 292 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms