RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 TMEM161AQ9NX61 479 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 NCKIPSDQ9NZQ3 722 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 DUSP10Q9Y6W6 482 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 TRIM66O15016 1216 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 PAEPP09466 180 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 OR1G1P47890 313 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 NUP107P57740 925 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 DSG1Q02413 1049 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 CSTF3Q12996 717 aaKnown RBP12.13□□□□□ -0.47
COL9A1-202ENST00000357250 SLC22A9Q8IVM8 553 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 SNX31Q8N9S9 440 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 SLC5A5Q92911 643 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 TADA1Q96BN2 335 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 CNDP1Q96KN2 507 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 CDK5RAP1Q96SZ6 601 aaKnown RBP12.13□□□□□ -0.47
COL9A1-202ENST00000357250 PACSIN1Q9BY11 444 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 AAASQ9NRG9 546 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 SUFUQ9UMX1 484 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 AP4E1Q9UPM8 1137 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 DTNAQ9Y4J8 743 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 AP4S1Q9Y587 144 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 CYP3A4P08684 503 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 DAB2P98082 770 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 ELAVL2Q12926 359 aaKnown RBP12.13□□□□□ -0.47
COL9A1-202ENST00000357250 SMAD1Q15797 465 aaKnown RBP12.13□□□□□ -0.47
COL9A1-202ENST00000357250 TRMT5Q32P41 509 aaKnown RBP12.13□□□□□ -0.47
COL9A1-202ENST00000357250 SYCP2LQ5T4T6 812 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 SEL1L3Q68CR1 1132 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 IFNEQ86WN2 208 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 TAGLN3Q9UI15 199 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 ACOT9Q9Y305 439 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 MON2Q7Z3U7 1717 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 F5H5T6 163 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 VIL1P09327 827 aaKnown RBP12.13□□□□□ -0.47
COL9A1-202ENST00000357250 FCGR1AP12314 374 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 NR2C2P49116 596 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 RARRES1P49788 294 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 ZRANB3Q5FWF4 1079 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 SH3RF1Q7Z6J0 888 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 KIF2BQ8N4N8 673 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 PGM2Q96G03 612 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 ECSITQ9BQ95 431 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 IDI2Q9BXS1 227 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 ADAM33Q9BZ11 813 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 PRKD2Q9BZL6 878 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 RXFP1Q9HBX9 757 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 TBC1D13Q9NVG8 400 aa12.13□□□□□ -0.47
COL9A1-202ENST00000357250 WNT10BO00744 389 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 CAND2O75155 1236 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 DDNO94850 711 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 CRTAMO95727 393 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 HMBSP08397 361 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 CYP2B6P20813 491 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ACO1P21399 889 aaKnown RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 PTPN4P29074 926 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 SCTRP47872 440 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ARHGAP15Q53QZ3 475 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 HORMAD1Q86X24 394 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ATG4AQ8WYN0 398 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 SLC35C1Q96A29 364 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 PLEKHA8Q96JA3 519 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 RMND5AQ9H871 391 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ANKZF1Q9H8Y5 726 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 SLC24A3Q9HC58 644 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 BARX2Q9UMQ3 279 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 PCDHA3Q9Y5H8 950 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 LOC100653049A0A140TA62 436 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 TMEM150BA6NC51 233 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 DISP2A7MBM2 1401 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ZBTB39O15060 712 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 KRT34O76011 436 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 MPOP05164 745 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 HLA-DPA1P20036 260 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 PRKCIP41743 596 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 PEX5P50542 639 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 NUDT2P50583 147 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 BNC2Q6ZN30 1099 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 NKX2-3Q8TAU0 364 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 CYGBQ8WWM9 190 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 LRRC39Q96DD0 335 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ZNF333Q96JL9 665 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 NR1H4Q96RI1 486 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 C17orf80Q9BSJ5 609 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 UBXN6Q9BZV1 441 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 M0R3G1 203 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 DNALI1O14645 258 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 SEC24DO94855 1032 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 PTPN7P35236 360 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ZNF157P51786 506 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 POLD3Q15054 466 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 SCUBE1Q8IWY4 988 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ADGRF2Q8IZF7 708 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 LZTR1Q8N653 840 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 RPRD1AQ96P16 312 aaPredicted RBP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 EMILIN2Q9BXX0 1053 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 DCLK3Q9C098 648 aa12.12□□□□□ -0.47
COL9A1-202ENST00000357250 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.12□□□□□ -0.47
COL9A1-202ENST00000357250 ADGRA3Q8IWK6 1321 aa12.11□□□□□ -0.47
COL9A1-202ENST00000357250 PMPCBO75439 489 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms