RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 NEUROD6Q96NK8 337 aa24.8■■□□□ 1.56
UPF1-207ENST00000599848 DMRT2Q9Y5R5 561 aa24.8■■□□□ 1.56
UPF1-207ENST00000599848 GOLGA6L3A6NEY3 463 aa24.79■■□□□ 1.56
UPF1-207ENST00000599848 GNAI3P08754 354 aa24.79■■□□□ 1.56
UPF1-207ENST00000599848 WASHC4Q2M389 1173 aa24.79■■□□□ 1.56
UPF1-207ENST00000599848 UBTFL1P0CB47 393 aaPredicted RBP24.79■■□□□ 1.56
UPF1-207ENST00000599848 DZIP1LQ8IYY4 767 aaKnown RBP24.79■■□□□ 1.56
UPF1-207ENST00000599848 PPP1R1BQ9UD71 204 aaPredicted RBP24.78■■□□□ 1.56
UPF1-207ENST00000599848 CT47A1Q5JQC4 288 aaPredicted RBP24.78■■□□□ 1.56
UPF1-207ENST00000599848 HIP1O00291 1037 aa24.78■■□□□ 1.56
UPF1-207ENST00000599848 ERC1Q8IUD2 1116 aa24.77■■□□□ 1.56
UPF1-207ENST00000599848 STRN4Q9NRL3 753 aa24.77■■□□□ 1.56
UPF1-207ENST00000599848 TOM1L2Q6ZVM7 507 aa24.76■■□□□ 1.55
UPF1-207ENST00000599848 GPS2Q13227 327 aa24.76■■□□□ 1.55
UPF1-207ENST00000599848 SAMD1Q6SPF0 538 aaPredicted RBP24.75■■□□□ 1.55
UPF1-207ENST00000599848 IFT140Q96RY7 1462 aa24.74■■□□□ 1.55
UPF1-207ENST00000599848 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.74■■□□□ 1.555e-7■■■■■ 83.5
UPF1-207ENST00000599848 PSMA5P28066 241 aa24.74■■□□□ 1.55
UPF1-207ENST00000599848 INTS3Q68E01 1043 aaKnown RBP24.74■■□□□ 1.55
UPF1-207ENST00000599848 WIZO95785 1651 aa24.74■■□□□ 1.55
UPF1-207ENST00000599848 NUTM2BA6NNL0 878 aaPredicted RBP24.74■■□□□ 1.55
UPF1-207ENST00000599848 NUTM2EB1AL46 878 aaPredicted RBP24.74■■□□□ 1.55
UPF1-207ENST00000599848 NUTM2AQ8IVF1 878 aaPredicted RBP24.74■■□□□ 1.55
UPF1-207ENST00000599848 ANKRD50Q9ULJ7 1429 aa24.73■■□□□ 1.55
UPF1-207ENST00000599848 TMEM132AQ24JP5 1023 aa24.73■■□□□ 1.55
UPF1-207ENST00000599848 AIMP1Q12904 312 aaKnown RBP24.72■■□□□ 1.55
UPF1-207ENST00000599848 NCAPD3P42695 1498 aa24.72■■□□□ 1.55
UPF1-207ENST00000599848 PRG4Q92954 1404 aaPredicted RBP24.72■■□□□ 1.55
UPF1-207ENST00000599848 PRDM11Q9NQV5 511 aa24.72■■□□□ 1.55
UPF1-207ENST00000599848 CABP4P57796 275 aa24.71■■□□□ 1.55
UPF1-207ENST00000599848 MRC2Q9UBG0 1479 aa24.71■■□□□ 1.55
UPF1-207ENST00000599848 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.71■■□□□ 1.552e-6■■■□□ 14.9
UPF1-207ENST00000599848 CLASRPQ8N2M8 674 aaKnown RBP24.71■■□□□ 1.55
UPF1-207ENST00000599848 NECTIN2Q92692 538 aa24.71■■□□□ 1.55
UPF1-207ENST00000599848 CDR1P51861 262 aa24.7■■□□□ 1.55
UPF1-207ENST00000599848 APAF1O14727 1248 aa24.7■■□□□ 1.54
UPF1-207ENST00000599848 RPGRIP1LQ68CZ1 1315 aa24.7■■□□□ 1.54
UPF1-207ENST00000599848 CCDC158Q5M9N0 1113 aa24.68■■□□□ 1.54
UPF1-207ENST00000599848 TMOD2Q9NZR1 351 aa24.68■■□□□ 1.54
UPF1-207ENST00000599848 EPS15P42566 896 aa24.68■■□□□ 1.54
UPF1-207ENST00000599848 HFM1A2PYH4 1435 aa24.68■■□□□ 1.54
UPF1-207ENST00000599848 CCDC73Q6ZRK6 1079 aa24.68■■□□□ 1.54
UPF1-207ENST00000599848 NACAP1Q9BZK3 213 aa24.67■■□□□ 1.54
UPF1-207ENST00000599848 CNNM1Q9NRU3 951 aa24.67■■□□□ 1.54
UPF1-207ENST00000599848 FYB1O15117 783 aa24.66■■□□□ 1.54
UPF1-207ENST00000599848 CNTROBQ8N137 903 aa24.66■■□□□ 1.54
UPF1-207ENST00000599848 IGF1RP08069 1367 aa24.66■■□□□ 1.54
UPF1-207ENST00000599848 FAM161AQ3B820 660 aa24.66■■□□□ 1.54
UPF1-207ENST00000599848 ZSCAN25Q6NSZ9 544 aa24.66■■□□□ 1.54
UPF1-207ENST00000599848 SMC3Q9UQE7 1217 aa24.65■■□□□ 1.54
UPF1-207ENST00000599848 TXLNAP40222 546 aa24.65■■□□□ 1.54
UPF1-207ENST00000599848 PAF1Q8N7H5 531 aa24.65■■□□□ 1.54
UPF1-207ENST00000599848 GZF1Q9H116 711 aaPredicted RBP24.65■■□□□ 1.54
UPF1-207ENST00000599848 CCDC173Q0VFZ6 552 aa24.65■■□□□ 1.54
UPF1-207ENST00000599848 BICD2Q8TD16 824 aa24.65■■□□□ 1.54
UPF1-207ENST00000599848 BCL2L13Q9BXK5 485 aa24.65■■□□□ 1.54
UPF1-207ENST00000599848 OFD1O75665 1012 aa24.64■■□□□ 1.54
UPF1-207ENST00000599848 NUTM2GQ5VZR2 741 aa24.64■■□□□ 1.54
UPF1-207ENST00000599848 AQRO60306 1485 aaKnown RBP eCLIP24.63■■□□□ 1.536e-7■■■■■ 31.8
UPF1-207ENST00000599848 PLIN1O60240 522 aa24.63■■□□□ 1.53
UPF1-207ENST00000599848 PIP4K2AP48426 406 aaPredicted RBP24.62■■□□□ 1.53
UPF1-207ENST00000599848 CDK5RAP3Q96JB5 506 aa24.62■■□□□ 1.53
UPF1-207ENST00000599848 GGNBP2Q9H3C7 697 aa24.62■■□□□ 1.53
UPF1-207ENST00000599848 ZNF652Q9Y2D9 606 aa24.62■■□□□ 1.53
UPF1-207ENST00000599848 KCNH5Q8NCM2 988 aa24.61■■□□□ 1.53
UPF1-207ENST00000599848 CABP2Q9NPB3 220 aa24.61■■□□□ 1.53
UPF1-207ENST00000599848 PRDM2Q13029 1718 aa24.61■■□□□ 1.53
UPF1-207ENST00000599848 PIP4K2BP78356 416 aa24.61■■□□□ 1.53
UPF1-207ENST00000599848 HMOX1P09601 288 aa24.6■■□□□ 1.53
UPF1-207ENST00000599848 FSD1Q9BTV5 496 aa24.6■■□□□ 1.53
UPF1-207ENST00000599848 DNAI2Q9GZS0 605 aa24.6■■□□□ 1.53
UPF1-207ENST00000599848 DDX49Q9Y6V7 483 aaKnown RBP24.59■■□□□ 1.53
UPF1-207ENST00000599848 FGD6Q6ZV73 1430 aa24.59■■□□□ 1.53
UPF1-207ENST00000599848 MPHOSPH8Q99549 860 aa24.59■■□□□ 1.53
UPF1-207ENST00000599848 FOXD4L1Q9NU39 408 aa24.59■■□□□ 1.53
UPF1-207ENST00000599848 COG6Q9Y2V7 657 aa24.59■■□□□ 1.53
UPF1-207ENST00000599848 TTC39AQ5SRH9 613 aa24.59■■□□□ 1.53
UPF1-207ENST00000599848 RAD54L2Q9Y4B4 1467 aa24.58■■□□□ 1.53
UPF1-207ENST00000599848 PRKRIP1Q9H875 184 aaPredicted RBP24.58■■□□□ 1.53
UPF1-207ENST00000599848 MYO6Q9UM54 1294 aa24.58■■□□□ 1.52
UPF1-207ENST00000599848 OLFM4Q6UX06 510 aa24.57■■□□□ 1.52
UPF1-207ENST00000599848 AFAP1Q8N556 730 aa24.57■■□□□ 1.52
UPF1-207ENST00000599848 TRIM21P19474 475 aaKnown RBP24.57■■□□□ 1.52
UPF1-207ENST00000599848 NAT10Q9H0A0 1025 aaKnown RBP24.56■■□□□ 1.52
UPF1-207ENST00000599848 CCDC7Q96M83 1385 aa24.56■■□□□ 1.52
UPF1-207ENST00000599848 NUCB2P80303 420 aa24.56■■□□□ 1.52
UPF1-207ENST00000599848 ZNF530Q6P9A1 599 aaPredicted RBP24.56■■□□□ 1.52
UPF1-207ENST00000599848 FAM177BA6PVY3 158 aa24.55■■□□□ 1.52
UPF1-207ENST00000599848 SETQ01105 290 aaPredicted RBP24.55■■□□□ 1.52
UPF1-207ENST00000599848 AMER1Q5JTC6 1135 aaPredicted RBP24.55■■□□□ 1.52
UPF1-207ENST00000599848 RRP1P56182 461 aaKnown RBP24.55■■□□□ 1.52
UPF1-207ENST00000599848 SASS6Q6UVJ0 657 aa24.55■■□□□ 1.52
UPF1-207ENST00000599848 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.55■■□□□ 1.52
UPF1-207ENST00000599848 ZBED9Q6R2W3 1325 aa24.55■■□□□ 1.52
UPF1-207ENST00000599848 STARD3NLO95772 234 aa24.54■■□□□ 1.52
UPF1-207ENST00000599848 DDX54Q8TDD1 881 aaKnown RBP24.54■■□□□ 1.52
UPF1-207ENST00000599848 PRAM1Q96QH2 718 aa24.54■■□□□ 1.52
UPF1-207ENST00000599848 FOXD4L5Q5VV16 416 aaPredicted RBP24.53■■□□□ 1.52
UPF1-207ENST00000599848 FOXD4L4Q8WXT5 416 aaPredicted RBP24.53■■□□□ 1.52
UPF1-207ENST00000599848 RTEL1-TNFRSF6BF6WH68 1400 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms