RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PRDM2Q13029 1718 aa15.31■□□□□ 0.04
USP3-203ENST00000538686 CFTRP13569 1480 aa15.3■□□□□ 0.04
USP3-203ENST00000538686 SPDYE4A6NLX3 237 aa15.3■□□□□ 0.04
USP3-203ENST00000538686 PER1O15534 1290 aaPredicted RBP15.3■□□□□ 0.04
USP3-203ENST00000538686 SYCP1Q15431 976 aa15.3■□□□□ 0.04
USP3-203ENST00000538686 GEMIN8Q9NWZ8 242 aaKnown RBP15.3■□□□□ 0.04
USP3-203ENST00000538686 E9PSI1 815 aa15.29■□□□□ 0.04
USP3-203ENST00000538686 EFCC1Q9HA90 598 aa15.29■□□□□ 0.04
USP3-203ENST00000538686 NPC1L1Q9UHC9 1359 aa15.29■□□□□ 0.04
USP3-203ENST00000538686 SHROOM2Q13796 1616 aa15.29■□□□□ 0.04
USP3-203ENST00000538686 WDR43Q15061 677 aaKnown RBP eCLIP15.29■□□□□ 0.04
USP3-203ENST00000538686 LRSAM1Q6UWE0 723 aa15.29■□□□□ 0.04
USP3-203ENST00000538686 CHIC2Q9UKJ5 165 aa15.29■□□□□ 0.04
USP3-203ENST00000538686 FKBP5Q13451 457 aaPredicted RBP15.28■□□□□ 0.04
USP3-203ENST00000538686 NOLC1Q14978 699 aaKnown RBP eCLIP15.28■□□□□ 0.04
USP3-203ENST00000538686 CAVIN1Q6NZI2 390 aaKnown RBP15.28■□□□□ 0.04
USP3-203ENST00000538686 SPTLC3Q9NUV7 552 aa15.28■□□□□ 0.04
USP3-203ENST00000538686 ADAMTS8Q9UP79 889 aa15.28■□□□□ 0.04
USP3-203ENST00000538686 SLFN14P0C7P3 912 aa15.27■□□□□ 0.03
USP3-203ENST00000538686 PRIM1P49642 420 aaKnown RBP15.27■□□□□ 0.03
USP3-203ENST00000538686 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.27■□□□□ 0.03
USP3-203ENST00000538686 ST20-MTHFSA0A0A6YYL1 179 aa15.26■□□□□ 0.03
USP3-203ENST00000538686 U2AF2P26368 475 aaKnown RBP eCLIP15.26■□□□□ 0.032e-7■■■□□ 16.9
USP3-203ENST00000538686 NUCB2P80303 420 aa15.26■□□□□ 0.03
USP3-203ENST00000538686 P3H3Q8IVL6 736 aa15.26■□□□□ 0.03
USP3-203ENST00000538686 UNC13AQ9UPW8 1703 aa15.26■□□□□ 0.03
USP3-203ENST00000538686 K7ELQ4 463 aaPredicted RBP15.26■□□□□ 0.03
USP3-203ENST00000538686 POLA1P09884 1462 aaPredicted RBP15.25■□□□□ 0.03
USP3-203ENST00000538686 CTIFO43310 598 aaKnown RBP15.25■□□□□ 0.03
USP3-203ENST00000538686 BCAR3O75815 825 aa15.25■□□□□ 0.03
USP3-203ENST00000538686 GRIN2BQ13224 1484 aa15.25■□□□□ 0.03
USP3-203ENST00000538686 SAMD9Q5K651 1589 aa15.25■□□□□ 0.03
USP3-203ENST00000538686 CHMP4AQ9BY43 222 aa15.24■□□□□ 0.03
USP3-203ENST00000538686 LRRIQ1Q96JM4 1722 aa15.24■□□□□ 0.03
USP3-203ENST00000538686 SSFA2P28290 1259 aa15.24■□□□□ 0.03
USP3-203ENST00000538686 TERF2Q15554 542 aa15.23■□□□□ 0.03
USP3-203ENST00000538686 ABCC2Q92887 1545 aa15.23■□□□□ 0.03
USP3-203ENST00000538686 LMBRD1Q9NUN5 540 aa15.23■□□□□ 0.03
USP3-203ENST00000538686 COG6Q9Y2V7 657 aa15.23■□□□□ 0.03
USP3-203ENST00000538686 PZPP20742 1482 aa15.22■□□□□ 0.03
USP3-203ENST00000538686 TSC1Q92574 1164 aa15.22■□□□□ 0.03
USP3-203ENST00000538686 ZNF622Q969S3 477 aaKnown RBP eCLIP15.22■□□□□ 0.03
USP3-203ENST00000538686 MORC2Q9Y6X9 1032 aaPredicted RBP15.22■□□□□ 0.03
USP3-203ENST00000538686 UHRF1BP1LA0JNW5 1464 aa15.22■□□□□ 0.03
USP3-203ENST00000538686 TRIM6-TRIM34B2RNG4 842 aa15.21■□□□□ 0.03
USP3-203ENST00000538686 TRIM34Q9BYJ4 488 aa15.21■□□□□ 0.03
USP3-203ENST00000538686 DDX41Q9UJV9 622 aaKnown RBP15.21■□□□□ 0.03
USP3-203ENST00000538686 IGSF3O75054 1194 aa15.21■□□□□ 0.03
USP3-203ENST00000538686 UVSSAQ2YD98 709 aa15.21■□□□□ 0.03
USP3-203ENST00000538686 AMER1Q5JTC6 1135 aaPredicted RBP15.21■□□□□ 0.03
USP3-203ENST00000538686 CTR9Q6PD62 1173 aa15.21■□□□□ 0.03
USP3-203ENST00000538686 HDAC5Q9UQL6 1122 aa15.21■□□□□ 0.03
USP3-203ENST00000538686 MBD3O95983 291 aa15.2■□□□□ 0.02
USP3-203ENST00000538686 YEATS2Q9ULM3 1422 aa15.2■□□□□ 0.02
USP3-203ENST00000538686 FAM135AQ9P2D6 1515 aa15.2■□□□□ 0.02
USP3-203ENST00000538686 COL17A1Q9UMD9 1497 aaPredicted RBP15.2■□□□□ 0.02
USP3-203ENST00000538686 CAPN2P17655 700 aa15.2■□□□□ 0.02
USP3-203ENST00000538686 MCTP1Q6DN14 999 aa15.2■□□□□ 0.02
USP3-203ENST00000538686 FAM184AQ8NB25 1140 aa15.2■□□□□ 0.02
USP3-203ENST00000538686 CTNNA3Q9UI47 895 aa15.2■□□□□ 0.02
USP3-203ENST00000538686 PANK1Q8TE04 598 aa15.19■□□□□ 0.02
USP3-203ENST00000538686 PCDHB15Q9Y5E8 787 aa15.19■□□□□ 0.02
USP3-203ENST00000538686 KIF16BQ96L93 1317 aa15.18■□□□□ 0.02
USP3-203ENST00000538686 TPM3P06753 285 aa15.18■□□□□ 0.02
USP3-203ENST00000538686 CC2D1BQ5T0F9 858 aaKnown RBP15.18■□□□□ 0.02
USP3-203ENST00000538686 JARID2Q92833 1246 aaPredicted RBP15.18■□□□□ 0.02
USP3-203ENST00000538686 PSEN1P49768 467 aa15.18■□□□□ 0.02
USP3-203ENST00000538686 DHX37Q8IY37 1157 aaKnown RBP15.18■□□□□ 0.02
USP3-203ENST00000538686 KRT222Q8N1A0 295 aa15.18■□□□□ 0.02
USP3-203ENST00000538686 DAPK1P53355 1430 aa15.17■□□□□ 0.02
USP3-203ENST00000538686 DNMT1P26358 1616 aaKnown RBP15.17■□□□□ 0.02
USP3-203ENST00000538686 CDCA8Q53HL2 280 aa15.17■□□□□ 0.02
USP3-203ENST00000538686 SYAP1Q96A49 352 aaPredicted RBP15.16■□□□□ 0.02
USP3-203ENST00000538686 RIOK3O14730 519 aaKnown RBP15.16■□□□□ 0.02
USP3-203ENST00000538686 PHF14O94880 888 aa15.16■□□□□ 0.02
USP3-203ENST00000538686 APPP05067 770 aa15.16■□□□□ 0.02
USP3-203ENST00000538686 CYP2E1P05181 493 aaPredicted RBP15.16■□□□□ 0.02
USP3-203ENST00000538686 TSPY26PQ9H489 355 aa15.16■□□□□ 0.02
USP3-203ENST00000538686 CWC22Q9HCG8 908 aaKnown RBP15.16■□□□□ 0.02
USP3-203ENST00000538686 PIK3C2GO75747 1445 aa15.16■□□□□ 0.02
USP3-203ENST00000538686 TNNT3P45378 269 aaPredicted RBP15.15■□□□□ 0.02
USP3-203ENST00000538686 AEBP1Q8IUX7 1158 aa15.15■□□□□ 0.02
USP3-203ENST00000538686 LAMC1P11047 1609 aa15.15■□□□□ 0.02
USP3-203ENST00000538686 FEZ2Q9UHY8 353 aaPredicted RBP15.15■□□□□ 0.02
USP3-203ENST00000538686 SYCE3A1L190 88 aa15.13■□□□□ 0.01
USP3-203ENST00000538686 MAPK8IP2Q13387 824 aaPredicted RBP15.13■□□□□ 0.01
USP3-203ENST00000538686 HDAC1Q13547 482 aaPredicted RBP15.13■□□□□ 0.01
USP3-203ENST00000538686 NCBP1Q09161 790 aaKnown RBP15.12■□□□□ 0.01
USP3-203ENST00000538686 GAS2L2Q8NHY3 880 aa15.12■□□□□ 0.01
USP3-203ENST00000538686 GPT2Q8TD30 523 aa15.12■□□□□ 0.01
USP3-203ENST00000538686 CEP170Q5SW79 1584 aa15.12■□□□□ 0.01
USP3-203ENST00000538686 GRIN2AQ12879 1464 aa15.12■□□□□ 0.01
USP3-203ENST00000538686 SOX12O15370 315 aa15.12■□□□□ 0.01
USP3-203ENST00000538686 CERS3Q8IU89 383 aa15.12■□□□□ 0.01
USP3-203ENST00000538686 PPP2R1AP30153 589 aa15.11■□□□□ 0.01
USP3-203ENST00000538686 KIF18AQ8NI77 898 aa15.11■□□□□ 0.01
USP3-203ENST00000538686 KIF2CQ99661 725 aa15.11■□□□□ 0.01
USP3-203ENST00000538686 CC2D2AQ9P2K1 1620 aa15.11■□□□□ 0.01
USP3-203ENST00000538686 CUL7Q14999 1698 aa15.11■□□□□ 0.01
USP3-203ENST00000538686 FAM177BA6PVY3 158 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms