RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 MRRFQ96E11 262 aaKnown RBP13.56□□□□□ -0.24
SYNE2-206ENST00000441438 UACAQ9BZF9 1416 aa13.56□□□□□ -0.24
SYNE2-206ENST00000441438 ANP32CO43423 234 aa13.55□□□□□ -0.24
SYNE2-206ENST00000441438 DNAJC14Q6Y2X3 702 aaPredicted RBP13.55□□□□□ -0.24
SYNE2-206ENST00000441438 MAF1Q9H063 256 aa13.55□□□□□ -0.24
SYNE2-206ENST00000441438 DHX16O60231 1041 aaKnown RBP13.55□□□□□ -0.24
SYNE2-206ENST00000441438 APLP1P51693 650 aa13.55□□□□□ -0.24
SYNE2-206ENST00000441438 ZNF280DQ6N043 979 aa13.55□□□□□ -0.24
SYNE2-206ENST00000441438 ARHGEF1Q92888 912 aaKnown RBP13.55□□□□□ -0.24
SYNE2-206ENST00000441438 PPRC1Q5VV67 1664 aaKnown RBP13.55□□□□□ -0.24
SYNE2-206ENST00000441438 FMN1Q68DA7 1419 aa13.55□□□□□ -0.24
SYNE2-206ENST00000441438 ARID4AP29374 1257 aaPredicted RBP13.55□□□□□ -0.24
SYNE2-206ENST00000441438 GET4Q7L5D6 327 aaPredicted RBP13.55□□□□□ -0.24
SYNE2-206ENST00000441438 TRIM44Q96DX7 344 aaPredicted RBP13.55□□□□□ -0.24
SYNE2-206ENST00000441438 JPH4Q96JJ6 628 aa13.55□□□□□ -0.24
SYNE2-206ENST00000441438 MAGI3Q5TCQ9 1506 aa13.54□□□□□ -0.24
SYNE2-206ENST00000441438 EXOC5O00471 708 aa13.54□□□□□ -0.24
SYNE2-206ENST00000441438 PARNO95453 639 aaKnown RBP13.54□□□□□ -0.24
SYNE2-206ENST00000441438 MAGEC2Q9UBF1 373 aaPredicted RBP13.54□□□□□ -0.24
SYNE2-206ENST00000441438 GOLGA6CA6NDK9 693 aa13.54□□□□□ -0.24
SYNE2-206ENST00000441438 GOLGA6BA6NDN3 693 aa13.54□□□□□ -0.24
SYNE2-206ENST00000441438 GOLGA6DP0CG33 693 aa13.54□□□□□ -0.24
SYNE2-206ENST00000441438 GOLGA6AQ9NYA3 693 aa13.54□□□□□ -0.24
SYNE2-206ENST00000441438 ABCC10Q5T3U5 1492 aa13.53□□□□□ -0.24
SYNE2-206ENST00000441438 NRDCO43847 1150 aa13.53□□□□□ -0.24
SYNE2-206ENST00000441438 RBM47A0AV96 593 aaKnown RBP13.53□□□□□ -0.24
SYNE2-206ENST00000441438 CXorf38Q8TB03 319 aa13.53□□□□□ -0.24
SYNE2-206ENST00000441438 CALRP27797 417 aaKnown RBP13.52□□□□□ -0.24
SYNE2-206ENST00000441438 CACTIN-AS1Q8N1I8 211 aa13.52□□□□□ -0.24
SYNE2-206ENST00000441438 GOLIM4O00461 696 aa13.52□□□□□ -0.25
SYNE2-206ENST00000441438 NBPF9Q3BBW0 867 aa13.51□□□□□ -0.25
SYNE2-206ENST00000441438 FAM135AQ9P2D6 1515 aa13.51□□□□□ -0.25
SYNE2-206ENST00000441438 REREQ9P2R6 1566 aa13.51□□□□□ -0.25
SYNE2-206ENST00000441438 SCP2P22307 547 aa13.5□□□□□ -0.25
SYNE2-206ENST00000441438 CC2D1BQ5T0F9 858 aaKnown RBP13.5□□□□□ -0.25
SYNE2-206ENST00000441438 TMEM51Q9NW97 253 aa13.5□□□□□ -0.25
SYNE2-206ENST00000441438 SPDYE4A6NLX3 237 aa13.5□□□□□ -0.25
SYNE2-206ENST00000441438 CASKIN1Q8WXD9 1431 aa13.5□□□□□ -0.25
SYNE2-206ENST00000441438 KCNA1Q09470 495 aa13.5□□□□□ -0.25
SYNE2-206ENST00000441438 WDR78Q5VTH9 848 aa13.5□□□□□ -0.25
SYNE2-206ENST00000441438 SPOCK3Q9BQ16 436 aa13.5□□□□□ -0.25
SYNE2-206ENST00000441438 METTL14Q9HCE5 456 aaKnown RBP13.5□□□□□ -0.25
SYNE2-206ENST00000441438 BCORL1Q5H9F3 1711 aa13.49□□□□□ -0.25
SYNE2-206ENST00000441438 ERBB3P21860 1342 aa13.49□□□□□ -0.25
SYNE2-206ENST00000441438 HMGB1P1B2RPK0 211 aaPredicted RBP13.49□□□□□ -0.25
SYNE2-206ENST00000441438 DDX46Q7L014 1031 aaKnown RBP13.49□□□□□ -0.25
SYNE2-206ENST00000441438 ATL2Q8NHH9 583 aa13.49□□□□□ -0.25
SYNE2-206ENST00000441438 TSR1Q2NL82 804 aaKnown RBP13.48□□□□□ -0.25
SYNE2-206ENST00000441438 CREBRFQ8IUR6 639 aa13.48□□□□□ -0.25
SYNE2-206ENST00000441438 RBM46Q8TBY0 533 aaKnown RBP13.48□□□□□ -0.25
SYNE2-206ENST00000441438 NUB1Q9Y5A7 615 aa13.48□□□□□ -0.25
SYNE2-206ENST00000441438 CCDC194A0A1B0GVG4 234 aa13.48□□□□□ -0.25
SYNE2-206ENST00000441438 ATF5Q9Y2D1 282 aaPredicted RBP13.48□□□□□ -0.25
SYNE2-206ENST00000441438 LRRIQ1Q96JM4 1722 aa13.48□□□□□ -0.25
SYNE2-206ENST00000441438 WDR7Q9Y4E6 1490 aa13.48□□□□□ -0.25
SYNE2-206ENST00000441438 LIG1P18858 919 aa13.48□□□□□ -0.25
SYNE2-206ENST00000441438 CSPP1Q1MSJ5 1256 aa13.47□□□□□ -0.25
SYNE2-206ENST00000441438 FNBP4Q8N3X1 1017 aaPredicted RBP13.47□□□□□ -0.25
SYNE2-206ENST00000441438 ZKSCAN2Q63HK3 967 aa13.46□□□□□ -0.25
SYNE2-206ENST00000441438 SND1Q7KZF4 910 aaKnown RBP eCLIP13.46□□□□□ -0.25
SYNE2-206ENST00000441438 PROSER2Q86WR7 435 aaPredicted RBP13.46□□□□□ -0.25
SYNE2-206ENST00000441438 RPGRIP1LQ68CZ1 1315 aa13.46□□□□□ -0.25
SYNE2-206ENST00000441438 ARHGAP35Q9NRY4 1499 aa13.46□□□□□ -0.25
SYNE2-206ENST00000441438 ZMYM4Q5VZL5 1548 aa13.46□□□□□ -0.26
SYNE2-206ENST00000441438 UBXN4Q92575 508 aa13.45□□□□□ -0.26
SYNE2-206ENST00000441438 RGL3Q3MIN7 710 aa13.45□□□□□ -0.26
SYNE2-206ENST00000441438 CCDC184Q52MB2 194 aa13.45□□□□□ -0.26
SYNE2-206ENST00000441438 TCF3P15923 654 aa13.45□□□□□ -0.26
SYNE2-206ENST00000441438 ITSN2Q9NZM3 1697 aa13.45□□□□□ -0.26
SYNE2-206ENST00000441438 CARNS1A5YM72 827 aa13.44□□□□□ -0.26
SYNE2-206ENST00000441438 RGS3P49796 1198 aa13.44□□□□□ -0.26
SYNE2-206ENST00000441438 HDAC1Q13547 482 aaPredicted RBP13.44□□□□□ -0.26
SYNE2-206ENST00000441438 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.44□□□□□ -0.26
SYNE2-206ENST00000441438 IVNS1ABPQ9Y6Y0 642 aa13.44□□□□□ -0.26
SYNE2-206ENST00000441438 U2SURPO15042 1029 aaKnown RBP13.44□□□□□ -0.26
SYNE2-206ENST00000441438 ZNF500O60304 480 aaPredicted RBP13.44□□□□□ -0.26
SYNE2-206ENST00000441438 POM121Q96HA1 1249 aa13.44□□□□□ -0.26
SYNE2-206ENST00000441438 GABBR1Q9UBS5 961 aa13.44□□□□□ -0.26
SYNE2-206ENST00000441438 SETDB1Q15047 1291 aa13.43□□□□□ -0.26
SYNE2-206ENST00000441438 MKL1Q969V6 931 aa13.43□□□□□ -0.26
SYNE2-206ENST00000441438 ARHGEF10LQ9HCE6 1279 aa13.43□□□□□ -0.26
SYNE2-206ENST00000441438 PTPRGP23470 1445 aa13.43□□□□□ -0.26
SYNE2-206ENST00000441438 TEX14Q8IWB6 1497 aa13.43□□□□□ -0.26
SYNE2-206ENST00000441438 BDNFP23560 247 aa13.43□□□□□ -0.26
SYNE2-206ENST00000441438 MSL3Q8N5Y2 521 aaKnown RBP13.43□□□□□ -0.26
SYNE2-206ENST00000441438 NEO1Q92859 1461 aa13.43□□□□□ -0.26
SYNE2-206ENST00000441438 HSP90AA2PQ14568 343 aaPredicted RBP13.43□□□□□ -0.26
SYNE2-206ENST00000441438 SEMA3EO15041 775 aa13.42□□□□□ -0.26
SYNE2-206ENST00000441438 TXNDC2Q86VQ3 553 aa13.42□□□□□ -0.26
SYNE2-206ENST00000441438 CIZ1Q9ULV3 898 aaPredicted RBP13.42□□□□□ -0.26
SYNE2-206ENST00000441438 PLEKHG3A1L390 1219 aa13.42□□□□□ -0.26
SYNE2-206ENST00000441438 TCERG1O14776 1098 aaKnown RBP13.42□□□□□ -0.26
SYNE2-206ENST00000441438 MIER1Q8N108 512 aa13.42□□□□□ -0.26
SYNE2-206ENST00000441438 FRMD4BQ9Y2L6 1034 aa13.42□□□□□ -0.26
SYNE2-206ENST00000441438 SBNO2Q9Y2G9 1366 aa13.41□□□□□ -0.26
SYNE2-206ENST00000441438 PREX2Q70Z35 1606 aa13.41□□□□□ -0.26
SYNE2-206ENST00000441438 SKIV2LQ15477 1246 aaKnown RBP13.41□□□□□ -0.26
SYNE2-206ENST00000441438 AK7Q96M32 723 aa13.41□□□□□ -0.26
SYNE2-206ENST00000441438 EPRSP07814 1512 aaKnown RBP13.41□□□□□ -0.26
SYNE2-206ENST00000441438 HSP90AB3PQ58FF7 597 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms