RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 SLC24A1O60721 1099 aa21.39■■□□□ 1.01
SYNE2-206ENST00000441438 NISCHQ9Y2I1 1504 aa20.41■□□□□ 0.86
SYNE2-206ENST00000441438 DAXXQ9UER7 740 aaPredicted RBP19.63■□□□□ 0.73
SYNE2-206ENST00000441438 MYT1Q01538 1121 aa19.41■□□□□ 0.7
SYNE2-206ENST00000441438 TTBK1Q5TCY1 1321 aaPredicted RBP19.35■□□□□ 0.69
SYNE2-206ENST00000441438 EHMT2Q96KQ7 1210 aa19.32■□□□□ 0.68
SYNE2-206ENST00000441438 PRKCSHP14314 528 aaPredicted RBP19.14■□□□□ 0.65
SYNE2-206ENST00000441438 APLP2Q06481 763 aa19.12■□□□□ 0.65
SYNE2-206ENST00000441438 PLPPR3Q6T4P5 718 aa19.11■□□□□ 0.65
SYNE2-206ENST00000441438 PELP1Q8IZL8 1130 aaKnown RBP19.07■□□□□ 0.64
SYNE2-206ENST00000441438 NCBP3Q53F19 620 aaKnown RBP19.04■□□□□ 0.64
SYNE2-206ENST00000441438 RTN4Q9NQC3 1192 aaKnown RBP18.99■□□□□ 0.63
SYNE2-206ENST00000441438 ERICH6Q7L0X2 663 aa18.85■□□□□ 0.61
SYNE2-206ENST00000441438 CHIC1Q5VXU3 224 aa18.81■□□□□ 0.6
SYNE2-206ENST00000441438 CCDC180Q9P1Z9 1646 aa18.79■□□□□ 0.6
SYNE2-206ENST00000441438 AMER1Q5JTC6 1135 aaPredicted RBP18.41■□□□□ 0.54
SYNE2-206ENST00000441438 ARXQ96QS3 562 aa18.36■□□□□ 0.53
SYNE2-206ENST00000441438 TIMELESSQ9UNS1 1208 aa18.19■□□□□ 0.5
SYNE2-206ENST00000441438 KCNA4P22459 653 aa18.13■□□□□ 0.49
SYNE2-206ENST00000441438 EIF5BO60841 1220 aaKnown RBP17.92■□□□□ 0.46
SYNE2-206ENST00000441438 RANGAP1P46060 587 aaPredicted RBP17.9■□□□□ 0.46
SYNE2-206ENST00000441438 CSRNP3Q8WYN3 585 aa17.89■□□□□ 0.45
SYNE2-206ENST00000441438 TULP1O00294 542 aaPredicted RBP17.84■□□□□ 0.45
SYNE2-206ENST00000441438 MYO15BQ96JP2 1530 aa17.77■□□□□ 0.44
SYNE2-206ENST00000441438 KLHL34Q8N239 644 aa17.76■□□□□ 0.43
SYNE2-206ENST00000441438 HOMEZQ8IX15 550 aa17.72■□□□□ 0.43
SYNE2-206ENST00000441438 TAOK2Q9UL54 1235 aa17.71■□□□□ 0.43
SYNE2-206ENST00000441438 DCAF1Q9Y4B6 1507 aa17.59■□□□□ 0.41
SYNE2-206ENST00000441438 PODXL2Q9NZ53 605 aa17.48■□□□□ 0.39
SYNE2-206ENST00000441438 PLEKHG5O94827 1062 aa17.4■□□□□ 0.38
SYNE2-206ENST00000441438 TPRNQ4KMQ1 711 aa17.4■□□□□ 0.38
SYNE2-206ENST00000441438 BCANQ96GW7 911 aa17.36■□□□□ 0.37
SYNE2-206ENST00000441438 NACADO15069 1562 aa17.34■□□□□ 0.37
SYNE2-206ENST00000441438 AEBP2Q6ZN18 517 aaPredicted RBP17.29■□□□□ 0.36
SYNE2-206ENST00000441438 SHROOM4Q9ULL8 1493 aa17.23■□□□□ 0.35
SYNE2-206ENST00000441438 GTF3C3Q9Y5Q9 886 aa17.2■□□□□ 0.34
SYNE2-206ENST00000441438 ABCC9O60706 1549 aa17.2■□□□□ 0.34
SYNE2-206ENST00000441438 BCL11AQ9H165 835 aa17.19■□□□□ 0.34
SYNE2-206ENST00000441438 ZCCHC6Q5VYS8 1495 aaKnown RBP17.16■□□□□ 0.34
SYNE2-206ENST00000441438 RB1CC1Q8TDY2 1594 aa17.16■□□□□ 0.34
SYNE2-206ENST00000441438 PHF23Q9BUL5 403 aaPredicted RBP17.15■□□□□ 0.34
SYNE2-206ENST00000441438 NPM2Q86SE8 214 aaKnown RBP17.11■□□□□ 0.33
SYNE2-206ENST00000441438 PLCB2Q00722 1185 aa16.99■□□□□ 0.31
SYNE2-206ENST00000441438 C14orf37Q86TY3 774 aa16.9■□□□□ 0.3
SYNE2-206ENST00000441438 FAM9AQ8IZU1 332 aaPredicted RBP16.82■□□□□ 0.28
SYNE2-206ENST00000441438 HAP1P54257 671 aaPredicted RBP16.81■□□□□ 0.28
SYNE2-206ENST00000441438 TMEM132AQ24JP5 1023 aa16.81■□□□□ 0.28
SYNE2-206ENST00000441438 FBXO3Q9UK99 471 aa16.79■□□□□ 0.28
SYNE2-206ENST00000441438 UNC13AQ9UPW8 1703 aa16.78■□□□□ 0.28
SYNE2-206ENST00000441438 LOC105371045A0A1W2PR82 267 aa16.72■□□□□ 0.27
SYNE2-206ENST00000441438 TRIM26Q12899 539 aaPredicted RBP16.71■□□□□ 0.26
SYNE2-206ENST00000441438 SLC4A1APQ9BWU0 796 aaKnown RBP16.71■□□□□ 0.26
SYNE2-206ENST00000441438 PDIA4P13667 645 aaKnown RBP16.62■□□□□ 0.25
SYNE2-206ENST00000441438 BICRAQ9NZM4 1560 aa16.53■□□□□ 0.24
SYNE2-206ENST00000441438 HRCP23327 699 aa16.5■□□□□ 0.23
SYNE2-206ENST00000441438 UBE2Q2Q8WVN8 375 aa16.47■□□□□ 0.23
SYNE2-206ENST00000441438 SUPT5HO00267 1087 aaKnown RBP16.45■□□□□ 0.22
SYNE2-206ENST00000441438 CHMP4AQ9BY43 222 aa16.41■□□□□ 0.22
SYNE2-206ENST00000441438 UBTFP17480 764 aaKnown RBP16.41■□□□□ 0.22
SYNE2-206ENST00000441438 VSIG10Q8N0Z9 540 aa16.37■□□□□ 0.21
SYNE2-206ENST00000441438 DCAF8L2P0C7V8 631 aa16.37■□□□□ 0.21
SYNE2-206ENST00000441438 KDM2AQ9Y2K7 1162 aa16.3■□□□□ 0.2
SYNE2-206ENST00000441438 SAMD1Q6SPF0 538 aaPredicted RBP16.3■□□□□ 0.2
SYNE2-206ENST00000441438 PDE4CQ08493 712 aa16.28■□□□□ 0.2
SYNE2-206ENST00000441438 ZBTB22O15209 634 aa16.2■□□□□ 0.18
SYNE2-206ENST00000441438 CNKSR2Q8WXI2 1034 aa16.2■□□□□ 0.18
SYNE2-206ENST00000441438 PEG3Q9GZU2 1588 aa16.19■□□□□ 0.18
SYNE2-206ENST00000441438 DHX37Q8IY37 1157 aaKnown RBP16.18■□□□□ 0.18
SYNE2-206ENST00000441438 PPP6R1Q9UPN7 881 aa16.14■□□□□ 0.17
SYNE2-206ENST00000441438 CDK11BP21127 795 aaKnown RBP16.13■□□□□ 0.17
SYNE2-206ENST00000441438 BRD2P25440 801 aaKnown RBP16.13■□□□□ 0.17
SYNE2-206ENST00000441438 FBLN2P98095 1184 aa16.13■□□□□ 0.17
SYNE2-206ENST00000441438 CDK11AQ9UQ88 783 aaPredicted RBP16.13■□□□□ 0.17
SYNE2-206ENST00000441438 NEFLP07196 543 aa16.09■□□□□ 0.17
SYNE2-206ENST00000441438 TAF7LQ5H9L4 462 aa16.09■□□□□ 0.17
SYNE2-206ENST00000441438 PKNOX2Q96KN3 472 aa16.07■□□□□ 0.16
SYNE2-206ENST00000441438 SCRIBQ14160 1630 aa16.07■□□□□ 0.16
SYNE2-206ENST00000441438 SMARCA2P51531 1590 aa16.05■□□□□ 0.16
SYNE2-206ENST00000441438 IGSF3O75054 1194 aa16.04■□□□□ 0.16
SYNE2-206ENST00000441438 HMGXB3Q12766 1538 aa15.98■□□□□ 0.15
SYNE2-206ENST00000441438 EIF4G1Q04637 1599 aaKnown RBP15.96■□□□□ 0.15
SYNE2-206ENST00000441438 DNAJC5BQ9UF47 199 aa15.93■□□□□ 0.14
SYNE2-206ENST00000441438 FKBP8Q14318 412 aa15.93■□□□□ 0.14
SYNE2-206ENST00000441438 PABPN1Q86U42 306 aaKnown RBP eCLIP15.93■□□□□ 0.14
SYNE2-206ENST00000441438 BAZ1AQ9NRL2 1556 aaPredicted RBP15.92■□□□□ 0.14
SYNE2-206ENST00000441438 BCL11BQ9C0K0 894 aaPredicted RBP15.91■□□□□ 0.14
SYNE2-206ENST00000441438 SMARCA4P51532 1647 aa15.88■□□□□ 0.13
SYNE2-206ENST00000441438 HSP90B1P14625 803 aaKnown RBP15.84■□□□□ 0.13
SYNE2-206ENST00000441438 NCAPD3P42695 1498 aa15.8■□□□□ 0.12
SYNE2-206ENST00000441438 FGD1P98174 961 aa15.79■□□□□ 0.12
SYNE2-206ENST00000441438 CC2D2AQ9P2K1 1620 aa15.77■□□□□ 0.11
SYNE2-206ENST00000441438 HMGB1P09429 215 aaKnown RBP15.76■□□□□ 0.11
SYNE2-206ENST00000441438 CFAP44Q96MT7 982 aa15.71■□□□□ 0.11
SYNE2-206ENST00000441438 CCDC9Q9Y3X0 531 aaKnown RBP15.7■□□□□ 0.1
SYNE2-206ENST00000441438 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
SYNE2-206ENST00000441438 ADRA2BP18089 450 aa15.65■□□□□ 0.1
SYNE2-206ENST00000441438 PUS7Q96PZ0 661 aaKnown RBP15.64■□□□□ 0.09
SYNE2-206ENST00000441438 ANO8Q9HCE9 1232 aaPredicted RBP15.62■□□□□ 0.09
SYNE2-206ENST00000441438 CENPBP07199 599 aaPredicted RBP15.61■□□□□ 0.09
SYNE2-206ENST00000441438 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 185.3 ms