RNA–Protein interactions for RNA: ENST00000415749.1

EPHA4-204, Transcript of EPH receptor A4, humanhuman

TSL 4

Gene EPHA4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-204ENST00000415749 RIC3Q7Z5B4 369 aa10.63□□□□□ -0.71
EPHA4-204ENST00000415749 URB2Q14146 1524 aaKnown RBP10.62□□□□□ -0.71
EPHA4-204ENST00000415749 SPTLC1O15269 473 aa10.61□□□□□ -0.71
EPHA4-204ENST00000415749 PPP4CP60510 307 aa10.61□□□□□ -0.71
EPHA4-204ENST00000415749 TUSC1Q2TAM9 212 aa10.61□□□□□ -0.71
EPHA4-204ENST00000415749 RSBN1LQ6PCB5 846 aaPredicted RBP10.61□□□□□ -0.71
EPHA4-204ENST00000415749 TSR3Q9UJK0 312 aaKnown RBP10.61□□□□□ -0.71
EPHA4-204ENST00000415749 CFTRP13569 1480 aa10.61□□□□□ -0.71
EPHA4-204ENST00000415749 MOXD2PA6NHM9 499 aa10.6□□□□□ -0.71
EPHA4-204ENST00000415749 HOXA2O43364 376 aa10.6□□□□□ -0.71
EPHA4-204ENST00000415749 UBTFP17480 764 aaKnown RBP10.59□□□□□ -0.71
EPHA4-204ENST00000415749 PROCA1Q8NCQ7 364 aaPredicted RBP10.59□□□□□ -0.71
EPHA4-204ENST00000415749 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.59□□□□□ -0.71
EPHA4-204ENST00000415749 HPS5Q9UPZ3 1129 aa10.59□□□□□ -0.71
EPHA4-204ENST00000415749 BCAMP50895 628 aa10.58□□□□□ -0.72
EPHA4-204ENST00000415749 LIMD1Q9UGP4 676 aa10.58□□□□□ -0.72
EPHA4-204ENST00000415749 ACTN4O43707 911 aaKnown RBP10.57□□□□□ -0.72
EPHA4-204ENST00000415749 ATP6V1AP38606 617 aa10.57□□□□□ -0.72
EPHA4-204ENST00000415749 RANGAP1P46060 587 aaPredicted RBP10.57□□□□□ -0.72
EPHA4-204ENST00000415749 ZNF608Q9ULD9 1512 aaPredicted RBP10.57□□□□□ -0.72
EPHA4-204ENST00000415749 FDX1P10109 184 aa10.56□□□□□ -0.72
EPHA4-204ENST00000415749 NDUFV2P19404 249 aa10.56□□□□□ -0.72
EPHA4-204ENST00000415749 FUT2Q10981 343 aa10.56□□□□□ -0.72
EPHA4-204ENST00000415749 WIZO95785 1651 aa10.56□□□□□ -0.72
EPHA4-204ENST00000415749 CSPP1Q1MSJ5 1256 aa10.54□□□□□ -0.72
EPHA4-204ENST00000415749 PRPF38BQ5VTL8 546 aaKnown RBP10.54□□□□□ -0.72
EPHA4-204ENST00000415749 THSD4Q6ZMP0 1018 aa10.54□□□□□ -0.72
EPHA4-204ENST00000415749 KCTD12Q96CX2 325 aaKnown RBP10.54□□□□□ -0.72
EPHA4-204ENST00000415749 PCDH10Q9P2E7 1040 aa10.54□□□□□ -0.72
EPHA4-204ENST00000415749 IFT140Q96RY7 1462 aa10.54□□□□□ -0.72
EPHA4-204ENST00000415749 FLIIQ13045 1269 aa10.53□□□□□ -0.72
EPHA4-204ENST00000415749 NYAP1Q6ZVC0 841 aa10.53□□□□□ -0.72
EPHA4-204ENST00000415749 ZBTB3Q9H5J0 574 aa10.53□□□□□ -0.72
EPHA4-204ENST00000415749 ARAP1Q96P48 1450 aa10.53□□□□□ -0.72
EPHA4-204ENST00000415749 NUTM2BA6NNL0 878 aaPredicted RBP10.52□□□□□ -0.73
EPHA4-204ENST00000415749 NUTM2EB1AL46 878 aaPredicted RBP10.52□□□□□ -0.73
EPHA4-204ENST00000415749 NUTM2DQ5VT03 806 aaPredicted RBP10.52□□□□□ -0.73
EPHA4-204ENST00000415749 PPP2R2DQ66LE6 453 aa10.52□□□□□ -0.73
EPHA4-204ENST00000415749 NUTM2AQ8IVF1 878 aaPredicted RBP10.52□□□□□ -0.73
EPHA4-204ENST00000415749 LILRB3O75022 631 aa10.51□□□□□ -0.73
EPHA4-204ENST00000415749 ZMYND15Q9H091 742 aa10.51□□□□□ -0.73
EPHA4-204ENST00000415749 APLP1P51693 650 aa10.5□□□□□ -0.73
EPHA4-204ENST00000415749 Q3C1V9 767 aa10.5□□□□□ -0.73
EPHA4-204ENST00000415749 TMEM259Q4ZIN3 620 aa10.5□□□□□ -0.73
EPHA4-204ENST00000415749 WBP1LQ9NX94 342 aa10.5□□□□□ -0.73
EPHA4-204ENST00000415749 PCDHB15Q9Y5E8 787 aa10.5□□□□□ -0.73
EPHA4-204ENST00000415749 SPDYE5A6NIY4 337 aa10.49□□□□□ -0.73
EPHA4-204ENST00000415749 RFC5P40937 340 aa10.49□□□□□ -0.73
EPHA4-204ENST00000415749 MTMR2Q13614 643 aa10.49□□□□□ -0.73
EPHA4-204ENST00000415749 MORN1Q5T089 497 aa10.49□□□□□ -0.73
EPHA4-204ENST00000415749 PCDHB3Q9Y5E6 796 aa10.49□□□□□ -0.73
EPHA4-204ENST00000415749 GUCA2AQ02747 115 aa10.48□□□□□ -0.73
EPHA4-204ENST00000415749 TRIM26Q12899 539 aaPredicted RBP10.48□□□□□ -0.73
EPHA4-204ENST00000415749 HLA-CQ95604 372 aa10.48□□□□□ -0.73
EPHA4-204ENST00000415749 MYT1LQ9UL68 1186 aa10.48□□□□□ -0.73
EPHA4-204ENST00000415749 PCDHGC3Q9UN70 934 aa10.48□□□□□ -0.73
EPHA4-204ENST00000415749 C6orf229H3BNL8 230 aa10.47□□□□□ -0.73
EPHA4-204ENST00000415749 NR1I2O75469 434 aa10.47□□□□□ -0.73
EPHA4-204ENST00000415749 HRCP23327 699 aa10.47□□□□□ -0.73
EPHA4-204ENST00000415749 QPCTQ16769 361 aa10.47□□□□□ -0.73
EPHA4-204ENST00000415749 PUS10Q3MIT2 529 aaKnown RBP10.47□□□□□ -0.73
EPHA4-204ENST00000415749 BANK1Q8NDB2 785 aa10.47□□□□□ -0.73
EPHA4-204ENST00000415749 RSF1Q96T23 1441 aaPredicted RBP10.47□□□□□ -0.73
EPHA4-204ENST00000415749 CABLES1Q8TDN4 633 aa10.46□□□□□ -0.73
EPHA4-204ENST00000415749 AQRO60306 1485 aaKnown RBP eCLIP10.46□□□□□ -0.74
EPHA4-204ENST00000415749 SLC27A5Q9Y2P5 690 aa10.45□□□□□ -0.74
EPHA4-204ENST00000415749 TOPBP1Q92547 1522 aa10.43□□□□□ -0.74
EPHA4-204ENST00000415749 PTPN5P54829 565 aa10.43□□□□□ -0.74
EPHA4-204ENST00000415749 RTL5Q5HYW3 569 aaPredicted RBP10.43□□□□□ -0.74
EPHA4-204ENST00000415749 HELBQ8NG08 1087 aaPredicted RBP10.43□□□□□ -0.74
EPHA4-204ENST00000415749 SALL2Q9Y467 1007 aaPredicted RBP10.43□□□□□ -0.74
EPHA4-204ENST00000415749 RETREG3Q86VR2 466 aa10.42□□□□□ -0.74
EPHA4-204ENST00000415749 CHD1O14646 1710 aa10.41□□□□□ -0.74
EPHA4-204ENST00000415749 ABCC8Q09428 1581 aa10.41□□□□□ -0.74
EPHA4-204ENST00000415749 APBB1O00213 710 aa10.41□□□□□ -0.74
EPHA4-204ENST00000415749 AP1G2O75843 785 aa10.41□□□□□ -0.74
EPHA4-204ENST00000415749 FMNL1O95466 1100 aaPredicted RBP10.41□□□□□ -0.74
EPHA4-204ENST00000415749 MCM6Q14566 821 aa10.41□□□□□ -0.74
EPHA4-204ENST00000415749 BLOC1S3Q6QNY0 202 aa10.41□□□□□ -0.74
EPHA4-204ENST00000415749 EIF4G3O43432 1585 aaKnown RBP10.4□□□□□ -0.74
EPHA4-204ENST00000415749 FBXO31Q5XUX0 539 aaPredicted RBP10.4□□□□□ -0.74
EPHA4-204ENST00000415749 SCUBE3Q8IX30 993 aa10.4□□□□□ -0.74
EPHA4-204ENST00000415749 ARID3AQ99856 593 aa10.4□□□□□ -0.74
EPHA4-204ENST00000415749 CHMP7Q8WUX9 453 aaPredicted RBP10.39□□□□□ -0.75
EPHA4-204ENST00000415749 TSC1Q92574 1164 aa10.39□□□□□ -0.75
EPHA4-204ENST00000415749 COPS2P61201 443 aa10.38□□□□□ -0.75
EPHA4-204ENST00000415749 BRICD5Q6PL45 260 aa10.38□□□□□ -0.75
EPHA4-204ENST00000415749 PRR7Q8TB68 274 aa10.38□□□□□ -0.75
EPHA4-204ENST00000415749 SYMPKQ92797 1274 aaKnown RBP10.38□□□□□ -0.75
EPHA4-204ENST00000415749 RNF166Q96A37 237 aaPredicted RBP10.38□□□□□ -0.75
EPHA4-204ENST00000415749 USB1Q9BQ65 265 aaKnown RBP10.38□□□□□ -0.75
EPHA4-204ENST00000415749 TOP2AP11388 1531 aaKnown RBP10.38□□□□□ -0.75
EPHA4-204ENST00000415749 SOCS7O14512 581 aa10.37□□□□□ -0.75
EPHA4-204ENST00000415749 PRM3Q9NNZ6 103 aa10.37□□□□□ -0.75
EPHA4-204ENST00000415749 CFAP99D6REC4 459 aa10.36□□□□□ -0.75
EPHA4-204ENST00000415749 USP17L8P0C7I0 530 aa10.36□□□□□ -0.75
EPHA4-204ENST00000415749 DESI1Q6ICB0 168 aa10.36□□□□□ -0.75
EPHA4-204ENST00000415749 RNF19BQ6ZMZ0 732 aa10.36□□□□□ -0.75
EPHA4-204ENST00000415749 SPNS2Q8IVW8 549 aa10.36□□□□□ -0.75
EPHA4-204ENST00000415749 HCSTQ9UBK5 93 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms