RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 CIZ1Q9ULV3 898 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-201ENST00000371621 V9GYY5 206 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-201ENST00000371621 NOLC1Q14978 699 aaKnown RBP eCLIP14.3□□□□□ -0.121e-5■□□□□ 10.6
PTPN1-201ENST00000371621 JARID2Q92833 1246 aaPredicted RBP14.3□□□□□ -0.12
PTPN1-201ENST00000371621 TOPBP1Q92547 1522 aa14.3□□□□□ -0.12
PTPN1-201ENST00000371621 RNF123Q5XPI4 1314 aa14.3□□□□□ -0.12
PTPN1-201ENST00000371621 FIBPO43427 364 aa14.3□□□□□ -0.12
PTPN1-201ENST00000371621 DMTNQ08495 405 aa14.3□□□□□ -0.12
PTPN1-201ENST00000371621 PDE3AQ14432 1141 aa14.3□□□□□ -0.12
PTPN1-201ENST00000371621 CALCOCO1Q9P1Z2 691 aa14.3□□□□□ -0.12
PTPN1-201ENST00000371621 FSD2A1L4K1 749 aa14.29□□□□□ -0.12
PTPN1-201ENST00000371621 NEK4P51957 841 aa14.29□□□□□ -0.12
PTPN1-201ENST00000371621 C1orf115Q9H7X2 142 aa14.29□□□□□ -0.12
PTPN1-201ENST00000371621 GOLGA6L19H0YKK7 550 aa14.29□□□□□ -0.12
PTPN1-201ENST00000371621 MBD3O95983 291 aa14.29□□□□□ -0.12
PTPN1-201ENST00000371621 KLHL40Q2TBA0 621 aa14.29□□□□□ -0.12
PTPN1-201ENST00000371621 BECN2A8MW95 431 aa14.29□□□□□ -0.12
PTPN1-201ENST00000371621 DNAJC2Q99543 621 aaKnown RBP14.29□□□□□ -0.12
PTPN1-201ENST00000371621 ZNF526Q8TF50 670 aaPredicted RBP14.28□□□□□ -0.12
PTPN1-201ENST00000371621 DUSP27Q5VZP5 1158 aa14.28□□□□□ -0.12
PTPN1-201ENST00000371621 RILPL2Q969X0 211 aa14.28□□□□□ -0.12
PTPN1-201ENST00000371621 RBSNQ9H1K0 784 aa14.28□□□□□ -0.12
PTPN1-201ENST00000371621 NOL7Q9UMY1 257 aaKnown RBP14.28□□□□□ -0.12
PTPN1-201ENST00000371621 DDX19BQ9UMR2 479 aa14.27□□□□□ -0.12
PTPN1-201ENST00000371621 STAC3Q96MF2 364 aa14.27□□□□□ -0.13
PTPN1-201ENST00000371621 VPS37CA5D8V6 355 aaPredicted RBP14.25□□□□□ -0.13
PTPN1-201ENST00000371621 PRIMPOLQ96LW4 560 aa14.25□□□□□ -0.13
PTPN1-201ENST00000371621 IBSPP21815 317 aaPredicted RBP14.25□□□□□ -0.13
PTPN1-201ENST00000371621 SAFB2Q14151 953 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPN1-201ENST00000371621 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.25□□□□□ -0.132e-8■□□□□ 8.7
PTPN1-201ENST00000371621 ADCY5O95622 1261 aa14.25□□□□□ -0.13
PTPN1-201ENST00000371621 MNS1Q8NEH6 495 aa14.25□□□□□ -0.13
PTPN1-201ENST00000371621 ANO2Q9NQ90 1003 aa14.25□□□□□ -0.13
PTPN1-201ENST00000371621 PCDHB15Q9Y5E8 787 aa14.24□□□□□ -0.13
PTPN1-201ENST00000371621 SLFN5Q08AF3 891 aa14.24□□□□□ -0.13
PTPN1-201ENST00000371621 NOM1Q5C9Z4 860 aaKnown RBP14.24□□□□□ -0.13
PTPN1-201ENST00000371621 SRPK2P78362 688 aaKnown RBP14.24□□□□□ -0.13
PTPN1-201ENST00000371621 DHX37Q8IY37 1157 aaKnown RBP14.23□□□□□ -0.13
PTPN1-201ENST00000371621 CHMP7Q8WUX9 453 aaPredicted RBP14.23□□□□□ -0.13
PTPN1-201ENST00000371621 MCM5P33992 734 aa14.23□□□□□ -0.13
PTPN1-201ENST00000371621 NCOA1Q15788 1441 aa14.23□□□□□ -0.13
PTPN1-201ENST00000371621 GTF2E1P29083 439 aaPredicted RBP14.23□□□□□ -0.13
PTPN1-201ENST00000371621 PPP2R1AP30153 589 aa14.23□□□□□ -0.13
PTPN1-201ENST00000371621 PRDM4Q9UKN5 801 aa14.23□□□□□ -0.13
PTPN1-201ENST00000371621 TSR2Q969E8 191 aaKnown RBP14.22□□□□□ -0.13
PTPN1-201ENST00000371621 PLEKHD1A6NEE1 506 aa14.22□□□□□ -0.13
PTPN1-201ENST00000371621 HCLS1P14317 486 aaPredicted RBP14.22□□□□□ -0.13
PTPN1-201ENST00000371621 CWC15Q9P013 229 aaKnown RBP14.22□□□□□ -0.13
PTPN1-201ENST00000371621 ZNF644Q9H582 1327 aaPredicted RBP14.22□□□□□ -0.13
PTPN1-201ENST00000371621 GAPVD1Q14C86 1478 aa14.22□□□□□ -0.13
PTPN1-201ENST00000371621 GTF2A1P52655 376 aaPredicted RBP14.22□□□□□ -0.13
PTPN1-201ENST00000371621 FILIP1Q7Z7B0 1213 aa14.22□□□□□ -0.13
PTPN1-201ENST00000371621 C10orf67Q8IYJ2 551 aa14.22□□□□□ -0.13
PTPN1-201ENST00000371621 DEF6Q9H4E7 631 aa14.21□□□□□ -0.13
PTPN1-201ENST00000371621 ARGLU1Q9NWB6 273 aaPredicted RBP14.21□□□□□ -0.13
PTPN1-201ENST00000371621 AQRO60306 1485 aaKnown RBP eCLIP14.21□□□□□ -0.133e-7■■■■□ 22.6
PTPN1-201ENST00000371621 TNNQ9UQP3 1299 aa14.21□□□□□ -0.13
PTPN1-201ENST00000371621 SLC4A10Q6U841 1118 aa14.21□□□□□ -0.14
PTPN1-201ENST00000371621 FAM177A1Q8N128 213 aaPredicted RBP14.21□□□□□ -0.14
PTPN1-201ENST00000371621 CFAP44Q96MT7 982 aa14.21□□□□□ -0.14
PTPN1-201ENST00000371621 TRMT1Q9NXH9 659 aaKnown RBP14.2□□□□□ -0.14
PTPN1-201ENST00000371621 CDC45O75419 566 aa14.2□□□□□ -0.14
PTPN1-201ENST00000371621 GAS2L2Q8NHY3 880 aa14.2□□□□□ -0.14
PTPN1-201ENST00000371621 DNMBPQ6XZF7 1577 aa14.2□□□□□ -0.14
PTPN1-201ENST00000371621 REC8O95072 547 aa14.2□□□□□ -0.14
PTPN1-201ENST00000371621 TCP11L2Q8N4U5 519 aa14.2□□□□□ -0.14
PTPN1-201ENST00000371621 KDM2BQ8NHM5 1336 aa14.2□□□□□ -0.14
PTPN1-201ENST00000371621 RABEP1Q15276 862 aa14.19□□□□□ -0.14
PTPN1-201ENST00000371621 MYRIPQ8NFW9 859 aa14.19□□□□□ -0.14
PTPN1-201ENST00000371621 OS9Q13438 667 aaPredicted RBP14.19□□□□□ -0.14
PTPN1-201ENST00000371621 BICD2Q8TD16 824 aa14.19□□□□□ -0.14
PTPN1-201ENST00000371621 BCL2L12Q9HB09 334 aa14.19□□□□□ -0.14
PTPN1-201ENST00000371621 EIF3AQ14152 1382 aaKnown RBP14.19□□□□□ -0.14
PTPN1-201ENST00000371621 KRT222Q8N1A0 295 aa14.19□□□□□ -0.14
PTPN1-201ENST00000371621 URB2Q14146 1524 aaKnown RBP14.18□□□□□ -0.14
PTPN1-201ENST00000371621 NOL10Q9BSC4 688 aaKnown RBP14.18□□□□□ -0.14
PTPN1-201ENST00000371621 ERCC6Q03468 1493 aa14.18□□□□□ -0.14
PTPN1-201ENST00000371621 SETQ01105 290 aaPredicted RBP14.18□□□□□ -0.14
PTPN1-201ENST00000371621 TERF1P54274 439 aa14.18□□□□□ -0.14
PTPN1-201ENST00000371621 LRSAM1Q6UWE0 723 aa14.18□□□□□ -0.14
PTPN1-201ENST00000371621 CHAMP1Q96JM3 812 aa14.18□□□□□ -0.14
PTPN1-201ENST00000371621 FMNL2Q96PY5 1086 aa14.18□□□□□ -0.14
PTPN1-201ENST00000371621 RIOK3O14730 519 aaKnown RBP14.17□□□□□ -0.14
PTPN1-201ENST00000371621 HSP90B1P14625 803 aaKnown RBP14.17□□□□□ -0.14
PTPN1-201ENST00000371621 RAB3GAP1Q15042 981 aa14.17□□□□□ -0.14
PTPN1-201ENST00000371621 ANTXR1Q9H6X2 564 aa14.17□□□□□ -0.14
PTPN1-201ENST00000371621 INTS3Q68E01 1043 aaKnown RBP14.17□□□□□ -0.14
PTPN1-201ENST00000371621 LEKR1Q6ZMV7 388 aa14.17□□□□□ -0.14
PTPN1-201ENST00000371621 CAMK4Q16566 473 aa14.17□□□□□ -0.14
PTPN1-201ENST00000371621 HSP90AB3PQ58FF7 597 aa14.17□□□□□ -0.14
PTPN1-201ENST00000371621 ATP6V1DQ9Y5K8 247 aa14.17□□□□□ -0.14
PTPN1-201ENST00000371621 TTLL5Q6EMB2 1281 aa14.16□□□□□ -0.14
PTPN1-201ENST00000371621 MVPQ14764 893 aaKnown RBP14.16□□□□□ -0.14
PTPN1-201ENST00000371621 UTP14CQ5TAP6 766 aaKnown RBP14.16□□□□□ -0.14
PTPN1-201ENST00000371621 MAP3K1Q13233 1512 aa14.16□□□□□ -0.14
PTPN1-201ENST00000371621 HFM1A2PYH4 1435 aa14.16□□□□□ -0.14
PTPN1-201ENST00000371621 HS1BP3Q53T59 392 aa14.16□□□□□ -0.14
PTPN1-201ENST00000371621 ABCA10Q8WWZ4 1543 aa14.16□□□□□ -0.14
PTPN1-201ENST00000371621 EXOSC9Q06265 439 aaKnown RBP14.15□□□□□ -0.14
PTPN1-201ENST00000371621 CHD1LQ86WJ1 897 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms