RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 PAXIP1Q6ZW49 1069 aaPredicted RBP19.58■□□□□ 0.72
NPHP3-201ENST00000337331 GGNBP2Q9H3C7 697 aa19.57■□□□□ 0.72
NPHP3-201ENST00000337331 PDCL2Q8N4E4 241 aa19.57■□□□□ 0.72
NPHP3-201ENST00000337331 STAC3Q96MF2 364 aa19.57■□□□□ 0.72
NPHP3-201ENST00000337331 GRIN2BQ13224 1484 aa19.57■□□□□ 0.72
NPHP3-201ENST00000337331 TMEM132EQ6IEE7 984 aa19.56■□□□□ 0.72
NPHP3-201ENST00000337331 RNF123Q5XPI4 1314 aa19.56■□□□□ 0.72
NPHP3-201ENST00000337331 ZNF592Q92610 1267 aa19.56■□□□□ 0.72
NPHP3-201ENST00000337331 HSP90B1P14625 803 aaKnown RBP19.56■□□□□ 0.72
NPHP3-201ENST00000337331 IFT140Q96RY7 1462 aa19.56■□□□□ 0.72
NPHP3-201ENST00000337331 CFAP70Q5T0N1 1121 aa19.55■□□□□ 0.72
NPHP3-201ENST00000337331 KIF16BQ96L93 1317 aa19.55■□□□□ 0.72
NPHP3-201ENST00000337331 KIF3AQ9Y496 699 aa19.55■□□□□ 0.72
NPHP3-201ENST00000337331 PRPF40AO75400 957 aaKnown RBP19.55■□□□□ 0.72
NPHP3-201ENST00000337331 SEC24BO95487 1268 aa19.55■□□□□ 0.72
NPHP3-201ENST00000337331 MTHFSP49914 203 aa19.55■□□□□ 0.72
NPHP3-201ENST00000337331 TRERF1Q96PN7 1200 aa19.55■□□□□ 0.72
NPHP3-201ENST00000337331 TCP11L2Q8N4U5 519 aa19.55■□□□□ 0.72
NPHP3-201ENST00000337331 TAF3Q5VWG9 929 aa19.54■□□□□ 0.72
NPHP3-201ENST00000337331 AFAP1Q8N556 730 aa19.54■□□□□ 0.72
NPHP3-201ENST00000337331 API5Q9BZZ5 524 aaKnown RBP19.54■□□□□ 0.72
NPHP3-201ENST00000337331 DIAPH3Q9NSV4 1193 aa19.54■□□□□ 0.72
NPHP3-201ENST00000337331 TNPO1Q92973 898 aaKnown RBP19.54■□□□□ 0.72
NPHP3-201ENST00000337331 PPP2R1AP30153 589 aa19.54■□□□□ 0.72
NPHP3-201ENST00000337331 ERICH4A6NGS2 130 aa19.53■□□□□ 0.72
NPHP3-201ENST00000337331 HFM1A2PYH4 1435 aa19.53■□□□□ 0.72
NPHP3-201ENST00000337331 HMOX1P09601 288 aa19.52■□□□□ 0.72
NPHP3-201ENST00000337331 REC8O95072 547 aa19.51■□□□□ 0.71
NPHP3-201ENST00000337331 TAF7LQ5H9L4 462 aa19.51■□□□□ 0.71
NPHP3-201ENST00000337331 CCDC94Q9BW85 323 aaPredicted RBP19.51■□□□□ 0.71
NPHP3-201ENST00000337331 PHF14O94880 888 aa19.51■□□□□ 0.71
NPHP3-201ENST00000337331 NECTIN2Q92692 538 aa19.5■□□□□ 0.71
NPHP3-201ENST00000337331 CABP2Q9NPB3 220 aa19.49■□□□□ 0.71
NPHP3-201ENST00000337331 ABCA10Q8WWZ4 1543 aa19.49■□□□□ 0.71
NPHP3-201ENST00000337331 NUCB2P80303 420 aa19.49■□□□□ 0.71
NPHP3-201ENST00000337331 TEFQ10587 303 aa19.49■□□□□ 0.71
NPHP3-201ENST00000337331 LETM1O95202 739 aaPredicted RBP19.48■□□□□ 0.71
NPHP3-201ENST00000337331 EIF2S2P20042 333 aaKnown RBP19.48■□□□□ 0.71
NPHP3-201ENST00000337331 IGHDP01880 384 aa19.47■□□□□ 0.71
NPHP3-201ENST00000337331 GNAI1P63096 354 aa19.46■□□□□ 0.71
NPHP3-201ENST00000337331 TBC1D32Q96NH3 1257 aa19.46■□□□□ 0.71
NPHP3-201ENST00000337331 CCDC9Q9Y3X0 531 aaKnown RBP19.46■□□□□ 0.71
NPHP3-201ENST00000337331 FKBP5Q13451 457 aaPredicted RBP19.46■□□□□ 0.71
NPHP3-201ENST00000337331 GTPBP4Q9BZE4 634 aaKnown RBP19.46■□□□□ 0.71
NPHP3-201ENST00000337331 ANO2Q9NQ90 1003 aa19.46■□□□□ 0.71
NPHP3-201ENST00000337331 FAM177BA6PVY3 158 aa19.45■□□□□ 0.7
NPHP3-201ENST00000337331 KIAA1107Q9UPP5 1409 aa19.45■□□□□ 0.7
NPHP3-201ENST00000337331 SNAPC4Q5SXM2 1469 aa19.45■□□□□ 0.7
NPHP3-201ENST00000337331 NCOA1Q15788 1441 aa19.44■□□□□ 0.7
NPHP3-201ENST00000337331 ATP6V1DQ9Y5K8 247 aa19.44■□□□□ 0.7
NPHP3-201ENST00000337331 SF3A1Q15459 793 aaKnown RBP19.44■□□□□ 0.7
NPHP3-201ENST00000337331 PRDM2Q13029 1718 aa19.44■□□□□ 0.7
NPHP3-201ENST00000337331 CYB5RLQ6IPT4 315 aa19.43■□□□□ 0.7
NPHP3-201ENST00000337331 SLC12A5Q9H2X9 1139 aa19.43■□□□□ 0.7
NPHP3-201ENST00000337331 CIZ1Q9ULV3 898 aaPredicted RBP19.43■□□□□ 0.7
NPHP3-201ENST00000337331 TIAM1Q13009 1591 aa19.43■□□□□ 0.7
NPHP3-201ENST00000337331 BIVM-ERCC5R4GMW8 1640 aa19.43■□□□□ 0.7
NPHP3-201ENST00000337331 SSFA2P28290 1259 aa19.42■□□□□ 0.7
NPHP3-201ENST00000337331 SYCE3A1L190 88 aa19.42■□□□□ 0.7
NPHP3-201ENST00000337331 IFT57Q9NWB7 429 aa19.42■□□□□ 0.7
NPHP3-201ENST00000337331 C9orf78Q9NZ63 289 aaPredicted RBP19.42■□□□□ 0.7
NPHP3-201ENST00000337331 KIF20AO95235 890 aa19.42■□□□□ 0.7
NPHP3-201ENST00000337331 TPM4P67936 248 aa19.42■□□□□ 0.7
NPHP3-201ENST00000337331 ERBB4Q15303 1308 aa19.41■□□□□ 0.7
NPHP3-201ENST00000337331 EXOSC9Q06265 439 aaKnown RBP19.41■□□□□ 0.7
NPHP3-201ENST00000337331 ZNF608Q9ULD9 1512 aaPredicted RBP19.41■□□□□ 0.7
NPHP3-201ENST00000337331 FSD2A1L4K1 749 aa19.41■□□□□ 0.7
NPHP3-201ENST00000337331 PDE3AQ14432 1141 aa19.41■□□□□ 0.7
NPHP3-201ENST00000337331 NAIPQ13075 1403 aa19.41■□□□□ 0.7
NPHP3-201ENST00000337331 OSCARQ8IYS5 282 aa19.41■□□□□ 0.7
NPHP3-201ENST00000337331 TOMM22Q9NS69 142 aa19.41■□□□□ 0.7
NPHP3-201ENST00000337331 H3BQV1 296 aa19.4■□□□□ 0.7
NPHP3-201ENST00000337331 C1orf141Q5JVX7 400 aa19.4■□□□□ 0.7
NPHP3-201ENST00000337331 IFFO2Q5TF58 517 aa19.4■□□□□ 0.7
NPHP3-201ENST00000337331 PRG4Q92954 1404 aaPredicted RBP19.4■□□□□ 0.7
NPHP3-201ENST00000337331 INTS3Q68E01 1043 aaKnown RBP19.39■□□□□ 0.7
NPHP3-201ENST00000337331 FAM184AQ8NB25 1140 aa19.39■□□□□ 0.69
NPHP3-201ENST00000337331 TSC1Q92574 1164 aa19.39■□□□□ 0.69
NPHP3-201ENST00000337331 ZKSCAN5Q9Y2L8 839 aa19.39■□□□□ 0.69
NPHP3-201ENST00000337331 TSPY26PQ9H489 355 aa19.39■□□□□ 0.69
NPHP3-201ENST00000337331 ZKSCAN1P17029 563 aaPredicted RBP19.38■□□□□ 0.69
NPHP3-201ENST00000337331 CCDC34Q96HJ3 373 aa19.38■□□□□ 0.69
NPHP3-201ENST00000337331 TSPYL4Q9UJ04 414 aa19.38■□□□□ 0.69
NPHP3-201ENST00000337331 K7ELQ4 463 aaPredicted RBP19.38■□□□□ 0.69
NPHP3-201ENST00000337331 SPC24Q8NBT2 197 aa19.38■□□□□ 0.69
NPHP3-201ENST00000337331 RUFY2Q8WXA3 655 aa19.38■□□□□ 0.69
NPHP3-201ENST00000337331 TSR2Q969E8 191 aaKnown RBP19.37■□□□□ 0.69
NPHP3-201ENST00000337331 C9orf84Q5VXU9 1444 aa19.37■□□□□ 0.69
NPHP3-201ENST00000337331 EFCAB5A4FU69 1503 aa19.37■□□□□ 0.69
NPHP3-201ENST00000337331 MAP3K1Q13233 1512 aa19.37■□□□□ 0.69
NPHP3-201ENST00000337331 NEXNQ0ZGT2 675 aa19.36■□□□□ 0.69
NPHP3-201ENST00000337331 GAS2L3Q86XJ1 694 aa19.36■□□□□ 0.69
NPHP3-201ENST00000337331 ROCK1Q13464 1354 aa19.36■□□□□ 0.69
NPHP3-201ENST00000337331 PRKAR2BP31323 418 aa19.35■□□□□ 0.69
NPHP3-201ENST00000337331 ZNF830Q96NB3 372 aaPredicted RBP19.35■□□□□ 0.69
NPHP3-201ENST00000337331 TEX35Q5T0J7 233 aa19.35■□□□□ 0.69
NPHP3-201ENST00000337331 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.35■□□□□ 0.69
NPHP3-201ENST00000337331 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.35■□□□□ 0.69
NPHP3-201ENST00000337331 BECN2A8MW95 431 aa19.35■□□□□ 0.69
NPHP3-201ENST00000337331 IFIT2P09913 472 aaKnown RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms