RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 PRAM1Q96QH2 718 aa10.14□□□□□ -0.79
VPS41-202ENST00000310301 FAM13BQ9NYF5 915 aa10.14□□□□□ -0.79
VPS41-202ENST00000310301 MAP3K1Q13233 1512 aa10.14□□□□□ -0.79
VPS41-202ENST00000310301 KDM6BO15054 1643 aa10.14□□□□□ -0.79
VPS41-202ENST00000310301 STRN4Q9NRL3 753 aa10.14□□□□□ -0.79
VPS41-202ENST00000310301 GPATCH8Q9UKJ3 1502 aaKnown RBP10.14□□□□□ -0.79
VPS41-202ENST00000310301 PHF14O94880 888 aa10.14□□□□□ -0.79
VPS41-202ENST00000310301 TMEM132EQ6IEE7 984 aa10.14□□□□□ -0.79
VPS41-202ENST00000310301 PMFBP1Q8TBY8 1022 aa10.14□□□□□ -0.79
VPS41-202ENST00000310301 NCKAP5LQ9HCH0 1330 aa10.13□□□□□ -0.79
VPS41-202ENST00000310301 ITPRIPQ8IWB1 547 aa10.13□□□□□ -0.79
VPS41-202ENST00000310301 KTN1Q86UP2 1357 aaKnown RBP10.13□□□□□ -0.79
VPS41-202ENST00000310301 G3V3G9 751 aa10.13□□□□□ -0.79
VPS41-202ENST00000310301 DCAF8Q5TAQ9 597 aa10.13□□□□□ -0.79
VPS41-202ENST00000310301 TTC5Q8N0Z6 440 aa10.13□□□□□ -0.79
VPS41-202ENST00000310301 PKNOX2Q96KN3 472 aa10.13□□□□□ -0.79
VPS41-202ENST00000310301 HDAC5Q9UQL6 1122 aa10.13□□□□□ -0.79
VPS41-202ENST00000310301 CSPP1Q1MSJ5 1256 aa10.12□□□□□ -0.79
VPS41-202ENST00000310301 NCBP3Q53F19 620 aaKnown RBP10.12□□□□□ -0.79
VPS41-202ENST00000310301 U2AF1L5P0DN76 240 aaPredicted RBP10.12□□□□□ -0.79
VPS41-202ENST00000310301 U2AF1Q01081 240 aaKnown RBP eCLIP10.12□□□□□ -0.797e-7■□□□□ 9.7
VPS41-202ENST00000310301 KLHL34Q8N239 644 aa10.12□□□□□ -0.79
VPS41-202ENST00000310301 FANCIQ9NVI1 1328 aa10.12□□□□□ -0.79
VPS41-202ENST00000310301 IPO8O15397 1037 aaKnown RBP10.12□□□□□ -0.79
VPS41-202ENST00000310301 HSP90B1P14625 803 aaKnown RBP10.12□□□□□ -0.79
VPS41-202ENST00000310301 CALRP27797 417 aaKnown RBP10.12□□□□□ -0.79
VPS41-202ENST00000310301 TOM1L2Q6ZVM7 507 aa10.12□□□□□ -0.79
VPS41-202ENST00000310301 SMG6Q86US8 1419 aaKnown RBP10.12□□□□□ -0.79
VPS41-202ENST00000310301 CFAP70Q5T0N1 1121 aa10.11□□□□□ -0.79
VPS41-202ENST00000310301 KCNH5Q8NCM2 988 aa10.11□□□□□ -0.79
VPS41-202ENST00000310301 C19orf44Q9H6X5 657 aa10.11□□□□□ -0.79
VPS41-202ENST00000310301 TEFQ10587 303 aa10.11□□□□□ -0.79
VPS41-202ENST00000310301 FOXD4L5Q5VV16 416 aaPredicted RBP10.11□□□□□ -0.79
VPS41-202ENST00000310301 FOXD4L4Q8WXT5 416 aaPredicted RBP10.11□□□□□ -0.79
VPS41-202ENST00000310301 NPHP3Q7Z494 1330 aa10.11□□□□□ -0.79
VPS41-202ENST00000310301 DUOX2Q9NRD8 1548 aa10.11□□□□□ -0.79
VPS41-202ENST00000310301 ADAMTS2O95450 1211 aa10.11□□□□□ -0.79
VPS41-202ENST00000310301 NOL8Q76FK4 1167 aaKnown RBP10.11□□□□□ -0.79
VPS41-202ENST00000310301 PDE4AP27815 886 aa10.1□□□□□ -0.79
VPS41-202ENST00000310301 LRRC59Q96AG4 307 aaKnown RBP10.1□□□□□ -0.79
VPS41-202ENST00000310301 PHF8Q9UPP1 1060 aa10.1□□□□□ -0.79
VPS41-202ENST00000310301 RIMBP3CA6NJZ7 1639 aa10.1□□□□□ -0.79
VPS41-202ENST00000310301 RIMBP3BA6NNM3 1639 aa10.1□□□□□ -0.79
VPS41-202ENST00000310301 RIMBP3Q9UFD9 1639 aa10.1□□□□□ -0.79
VPS41-202ENST00000310301 DDX49Q9Y6V7 483 aaKnown RBP10.1□□□□□ -0.79
VPS41-202ENST00000310301 ITSN2Q9NZM3 1697 aa10.1□□□□□ -0.79
VPS41-202ENST00000310301 TRAPPC8Q9Y2L5 1435 aa10.09□□□□□ -0.79
VPS41-202ENST00000310301 SKOR2Q2VWA4 1001 aaPredicted RBP10.09□□□□□ -0.79
VPS41-202ENST00000310301 TATP17735 454 aaPredicted RBP10.08□□□□□ -0.8
VPS41-202ENST00000310301 ANO8Q9HCE9 1232 aaPredicted RBP10.08□□□□□ -0.8
VPS41-202ENST00000310301 ABCC5O15440 1437 aa10.08□□□□□ -0.8
VPS41-202ENST00000310301 TPM3P06753 285 aa10.08□□□□□ -0.8
VPS41-202ENST00000310301 CCAR2Q8N163 923 aaKnown RBP10.08□□□□□ -0.8
VPS41-202ENST00000310301 GPS2Q13227 327 aa10.08□□□□□ -0.8
VPS41-202ENST00000310301 RALBP1Q15311 655 aa10.08□□□□□ -0.8
VPS41-202ENST00000310301 SYCP2Q9BX26 1530 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 KCNA6P17658 529 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 ZNF592Q92610 1267 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 CCDC61Q9Y6R9 512 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 PDE4CQ08493 712 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 CDK19Q9BWU1 502 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 STK31Q9BXU1 1019 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 TBX22Q9Y458 520 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 ATAD2Q6PL18 1390 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.07□□□□□ -0.8
VPS41-202ENST00000310301 ST20-MTHFSA0A0A6YYL1 179 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 PATL2C9JE40 543 aaKnown RBP10.07□□□□□ -0.8
VPS41-202ENST00000310301 NUTM2GQ5VZR2 741 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 CREBRFQ8IUR6 639 aa10.07□□□□□ -0.8
VPS41-202ENST00000310301 FAM161AQ3B820 660 aa10.06□□□□□ -0.8
VPS41-202ENST00000310301 FAM43AQ8N2R8 423 aa10.06□□□□□ -0.8
VPS41-202ENST00000310301 MAGI3Q5TCQ9 1506 aa10.06□□□□□ -0.8
VPS41-202ENST00000310301 TEX35Q5T0J7 233 aa10.06□□□□□ -0.8
VPS41-202ENST00000310301 PPP1R1BQ9UD71 204 aaPredicted RBP10.06□□□□□ -0.8
VPS41-202ENST00000310301 ST18O60284 1047 aa10.06□□□□□ -0.8
VPS41-202ENST00000310301 MAPKBP1O60336 1514 aa10.06□□□□□ -0.8
VPS41-202ENST00000310301 CABP2Q9NPB3 220 aa10.06□□□□□ -0.8
VPS41-202ENST00000310301 NCOA1Q15788 1441 aa10.05□□□□□ -0.8
VPS41-202ENST00000310301 TRIM6-TRIM34B2RNG4 842 aa10.05□□□□□ -0.8
VPS41-202ENST00000310301 KRT28Q7Z3Y7 464 aa10.05□□□□□ -0.8
VPS41-202ENST00000310301 RIMS2Q9UQ26 1411 aa10.05□□□□□ -0.8
VPS41-202ENST00000310301 PLEKHO1Q53GL0 409 aaPredicted RBP10.04□□□□□ -0.8
VPS41-202ENST00000310301 FOXO3O43524 673 aa10.04□□□□□ -0.8
VPS41-202ENST00000310301 CCDC34Q96HJ3 373 aa10.04□□□□□ -0.8
VPS41-202ENST00000310301 SPG7Q9UQ90 795 aa10.04□□□□□ -0.8
VPS41-202ENST00000310301 PTPN23Q9H3S7 1636 aa10.04□□□□□ -0.8
VPS41-202ENST00000310301 ISY1Q9ULR0 285 aaKnown RBP10.03□□□□□ -0.8
VPS41-202ENST00000310301 PODXL2Q9NZ53 605 aa10.03□□□□□ -0.8
VPS41-202ENST00000310301 GOLGA6L19H0YKK7 550 aa10.03□□□□□ -0.8
VPS41-202ENST00000310301 CLUAP1Q96AJ1 413 aa10.03□□□□□ -0.8
VPS41-202ENST00000310301 NUDT16Q96DE0 195 aaKnown RBP10.03□□□□□ -0.8
VPS41-202ENST00000310301 PRKCSHP14314 528 aaPredicted RBP10.03□□□□□ -0.8
VPS41-202ENST00000310301 CLASP1Q7Z460 1538 aa10.03□□□□□ -0.8
VPS41-202ENST00000310301 KIF16BQ96L93 1317 aa10.03□□□□□ -0.8
VPS41-202ENST00000310301 CENPQQ7L2Z9 268 aaPredicted RBP10.03□□□□□ -0.8
VPS41-202ENST00000310301 NBPF8Q3BBV2 869 aa10.02□□□□□ -0.8
VPS41-202ENST00000310301 NBPF14Q5TI25 921 aa10.02□□□□□ -0.8
VPS41-202ENST00000310301 SMC4Q9NTJ3 1288 aa10.02□□□□□ -0.8
VPS41-202ENST00000310301 APPP05067 770 aa10.02□□□□□ -0.81
VPS41-202ENST00000310301 FOXD4L6Q3SYB3 417 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms