RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 ZMYND15Q9H091 742 aa11.91□□□□□ -0.5
CXCR4-201ENST00000241393 MOXD2PA6NHM9 499 aa11.91□□□□□ -0.5
CXCR4-201ENST00000241393 APBB1O00213 710 aa11.91□□□□□ -0.5
CXCR4-201ENST00000241393 BANK1Q8NDB2 785 aa11.91□□□□□ -0.5
CXCR4-201ENST00000241393 CFHP08603 1231 aa11.9□□□□□ -0.5
CXCR4-201ENST00000241393 PPP2R2DQ66LE6 453 aa11.9□□□□□ -0.5
CXCR4-201ENST00000241393 POTEB3A0JP26 581 aa11.89□□□□□ -0.51
CXCR4-201ENST00000241393 NUTM2BA6NNL0 878 aaPredicted RBP11.89□□□□□ -0.51
CXCR4-201ENST00000241393 NUTM2EB1AL46 878 aaPredicted RBP11.89□□□□□ -0.51
CXCR4-201ENST00000241393 HOXA2O43364 376 aa11.89□□□□□ -0.51
CXCR4-201ENST00000241393 SLC10A3P09131 477 aa11.89□□□□□ -0.51
CXCR4-201ENST00000241393 NUTM2DQ5VT03 806 aaPredicted RBP11.89□□□□□ -0.51
CXCR4-201ENST00000241393 POTEBQ6S5H4 581 aa11.89□□□□□ -0.51
CXCR4-201ENST00000241393 NUTM2AQ8IVF1 878 aaPredicted RBP11.89□□□□□ -0.51
CXCR4-201ENST00000241393 LIMD1Q9UGP4 676 aa11.89□□□□□ -0.51
CXCR4-201ENST00000241393 FDX1P10109 184 aa11.88□□□□□ -0.51
CXCR4-201ENST00000241393 ZBTB3Q9H5J0 574 aa11.88□□□□□ -0.51
CXCR4-201ENST00000241393 CFTRP13569 1480 aa11.88□□□□□ -0.51
CXCR4-201ENST00000241393 ERICH3Q5RHP9 1530 aa11.88□□□□□ -0.51
CXCR4-201ENST00000241393 RFC5P40937 340 aa11.87□□□□□ -0.51
CXCR4-201ENST00000241393 CLIP1P30622 1438 aa11.87□□□□□ -0.51
CXCR4-201ENST00000241393 PRM3Q9NNZ6 103 aa11.87□□□□□ -0.51
CXCR4-201ENST00000241393 SPDYE5A6NIY4 337 aa11.86□□□□□ -0.51
CXCR4-201ENST00000241393 HRO43593 1189 aa11.86□□□□□ -0.51
CXCR4-201ENST00000241393 ATP6V1AP38606 617 aa11.86□□□□□ -0.51
CXCR4-201ENST00000241393 RAD21O60216 631 aa11.85□□□□□ -0.51
CXCR4-201ENST00000241393 CSPP1Q1MSJ5 1256 aa11.85□□□□□ -0.51
CXCR4-201ENST00000241393 VPS8Q8N3P4 1428 aa11.85□□□□□ -0.51
CXCR4-201ENST00000241393 NDUFV2P19404 249 aa11.84□□□□□ -0.51
CXCR4-201ENST00000241393 PPP4CP60510 307 aa11.84□□□□□ -0.51
CXCR4-201ENST00000241393 LCE2DQ5TA82 110 aaPredicted RBP11.84□□□□□ -0.51
CXCR4-201ENST00000241393 RAPGEF2Q9Y4G8 1499 aa11.84□□□□□ -0.51
CXCR4-201ENST00000241393 PRXQ9BXM0 1461 aa11.83□□□□□ -0.52
CXCR4-201ENST00000241393 LILRB3O75022 631 aa11.83□□□□□ -0.52
CXCR4-201ENST00000241393 MCM6Q14566 821 aa11.83□□□□□ -0.52
CXCR4-201ENST00000241393 Q3C1V9 767 aa11.82□□□□□ -0.52
CXCR4-201ENST00000241393 WNT2BQ93097 391 aa11.82□□□□□ -0.52
CXCR4-201ENST00000241393 SOWAHBA6NEL2 793 aa11.81□□□□□ -0.52
CXCR4-201ENST00000241393 FUT2Q10981 343 aa11.81□□□□□ -0.52
CXCR4-201ENST00000241393 TSR3Q9UJK0 312 aaKnown RBP11.81□□□□□ -0.52
CXCR4-201ENST00000241393 CUX1P39880 1505 aa11.81□□□□□ -0.52
CXCR4-201ENST00000241393 PRDM2Q13029 1718 aa11.81□□□□□ -0.52
CXCR4-201ENST00000241393 ACTN4O43707 911 aaKnown RBP11.81□□□□□ -0.52
CXCR4-201ENST00000241393 MTMR2Q13614 643 aa11.81□□□□□ -0.52
CXCR4-201ENST00000241393 CCER1Q8TC90 406 aaPredicted RBP11.81□□□□□ -0.52
CXCR4-201ENST00000241393 SOCS7O14512 581 aa11.8□□□□□ -0.52
CXCR4-201ENST00000241393 WWC1Q8IX03 1113 aa11.8□□□□□ -0.52
CXCR4-201ENST00000241393 HELBQ8NG08 1087 aaPredicted RBP11.8□□□□□ -0.52
CXCR4-201ENST00000241393 HPS5Q9UPZ3 1129 aa11.8□□□□□ -0.52
CXCR4-201ENST00000241393 KIF27Q86VH2 1401 aa11.79□□□□□ -0.52
CXCR4-201ENST00000241393 A6NJR5 290 aa11.78□□□□□ -0.52
CXCR4-201ENST00000241393 PCDHB15Q9Y5E8 787 aa11.78□□□□□ -0.52
CXCR4-201ENST00000241393 C6orf229H3BNL8 230 aa11.78□□□□□ -0.52
CXCR4-201ENST00000241393 AP1G2O75843 785 aa11.78□□□□□ -0.52
CXCR4-201ENST00000241393 QPCTQ16769 361 aa11.77□□□□□ -0.53
CXCR4-201ENST00000241393 NYAP1Q6ZVC0 841 aa11.75□□□□□ -0.53
CXCR4-201ENST00000241393 NR1I2O75469 434 aa11.75□□□□□ -0.53
CXCR4-201ENST00000241393 CABLES1Q8TDN4 633 aa11.75□□□□□ -0.53
CXCR4-201ENST00000241393 CADPSQ9ULU8 1353 aa11.73□□□□□ -0.53
CXCR4-201ENST00000241393 BCAMP50895 628 aa11.73□□□□□ -0.53
CXCR4-201ENST00000241393 RTL5Q5HYW3 569 aaPredicted RBP11.73□□□□□ -0.53
CXCR4-201ENST00000241393 MORN1Q5T089 497 aa11.73□□□□□ -0.53
CXCR4-201ENST00000241393 PCDHGC3Q9UN70 934 aa11.73□□□□□ -0.53
CXCR4-201ENST00000241393 PCDHB3Q9Y5E6 796 aa11.72□□□□□ -0.53
CXCR4-201ENST00000241393 GUCA2AQ02747 115 aa11.71□□□□□ -0.53
CXCR4-201ENST00000241393 RETREG3Q86VR2 466 aa11.71□□□□□ -0.53
CXCR4-201ENST00000241393 USP17L8P0C7I0 530 aa11.71□□□□□ -0.54
CXCR4-201ENST00000241393 SALL2Q9Y467 1007 aaPredicted RBP11.71□□□□□ -0.54
CXCR4-201ENST00000241393 TSC1Q92574 1164 aa11.7□□□□□ -0.54
CXCR4-201ENST00000241393 ARAP1Q96P48 1450 aa11.69□□□□□ -0.54
CXCR4-201ENST00000241393 PNMA1Q8ND90 353 aa11.69□□□□□ -0.54
CXCR4-201ENST00000241393 PROSER2Q86WR7 435 aaPredicted RBP11.68□□□□□ -0.54
CXCR4-201ENST00000241393 HLA-CQ95604 372 aa11.68□□□□□ -0.54
CXCR4-201ENST00000241393 SNRKQ9NRH2 765 aa11.68□□□□□ -0.54
CXCR4-201ENST00000241393 FMNL1O95466 1100 aaPredicted RBP11.68□□□□□ -0.54
CXCR4-201ENST00000241393 THSD4Q6ZMP0 1018 aa11.68□□□□□ -0.54
CXCR4-201ENST00000241393 KRTAP3-3Q9BYR6 98 aa11.68□□□□□ -0.54
CXCR4-201ENST00000241393 KRTAP3-2Q9BYR7 98 aa11.68□□□□□ -0.54
CXCR4-201ENST00000241393 SLC27A5Q9Y2P5 690 aa11.68□□□□□ -0.54
CXCR4-201ENST00000241393 CC2D2AQ9P2K1 1620 aa11.68□□□□□ -0.54
CXCR4-201ENST00000241393 PRR7Q8TB68 274 aa11.67□□□□□ -0.54
CXCR4-201ENST00000241393 TTBK1Q5TCY1 1321 aaPredicted RBP11.67□□□□□ -0.54
CXCR4-201ENST00000241393 APLP1P51693 650 aa11.66□□□□□ -0.54
CXCR4-201ENST00000241393 PUS10Q3MIT2 529 aaKnown RBP11.66□□□□□ -0.54
CXCR4-201ENST00000241393 DESI1Q6ICB0 168 aa11.66□□□□□ -0.54
CXCR4-201ENST00000241393 CLUAP1Q96AJ1 413 aa11.66□□□□□ -0.54
CXCR4-201ENST00000241393 TRAK2O60296 914 aa11.65□□□□□ -0.54
CXCR4-201ENST00000241393 KCTD12Q96CX2 325 aaKnown RBP11.65□□□□□ -0.54
CXCR4-201ENST00000241393 CDAN1Q8IWY9 1227 aa11.65□□□□□ -0.55
CXCR4-201ENST00000241393 MTMR14Q8NCE2 650 aa11.65□□□□□ -0.55
CXCR4-201ENST00000241393 NDUFB9Q9Y6M9 179 aa11.65□□□□□ -0.55
CXCR4-201ENST00000241393 FBXO31Q5XUX0 539 aaPredicted RBP11.64□□□□□ -0.55
CXCR4-201ENST00000241393 POTEGQ6S5H5 508 aa11.64□□□□□ -0.55
CXCR4-201ENST00000241393 USB1Q9BQ65 265 aaKnown RBP11.64□□□□□ -0.55
CXCR4-201ENST00000241393 WBP1LQ9NX94 342 aa11.64□□□□□ -0.55
CXCR4-201ENST00000241393 COG6Q9Y2V7 657 aa11.64□□□□□ -0.55
CXCR4-201ENST00000241393 CUX2O14529 1486 aa11.63□□□□□ -0.55
CXCR4-201ENST00000241393 IGF1RP08069 1367 aa11.63□□□□□ -0.55
CXCR4-201ENST00000241393 SCUBE3Q8IX30 993 aa11.62□□□□□ -0.55
CXCR4-201ENST00000241393 CFAP99D6REC4 459 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms