RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 CHIC1Q5VXU3 224 aa26.95■■□□□ 1.91
CXCR4-201ENST00000241393 AEBP2Q6ZN18 517 aaPredicted RBP26.95■■□□□ 1.91
CXCR4-201ENST00000241393 PHF23Q9BUL5 403 aaPredicted RBP23.6■■□□□ 1.37
CXCR4-201ENST00000241393 SENP3Q9H4L4 574 aaPredicted RBP23.09■■□□□ 1.29
CXCR4-201ENST00000241393 PLPPR3Q6T4P5 718 aa22.2■■□□□ 1.15
CXCR4-201ENST00000241393 FOXD1Q16676 465 aa21.18■□□□□ 0.98
CXCR4-201ENST00000241393 ADRA2BP18089 450 aa20.71■□□□□ 0.91
CXCR4-201ENST00000241393 PPP6R1Q9UPN7 881 aa20.64■□□□□ 0.89
CXCR4-201ENST00000241393 PIAS4Q8N2W9 510 aaPredicted RBP20.19■□□□□ 0.82
CXCR4-201ENST00000241393 MSH5O43196 834 aa19.58■□□□□ 0.72
CXCR4-201ENST00000241393 PPP4R3CPQ6ZMV5 832 aa19.53■□□□□ 0.72
CXCR4-201ENST00000241393 KCNA4P22459 653 aa19.51■□□□□ 0.71
CXCR4-201ENST00000241393 NCBP3Q53F19 620 aaKnown RBP19.36■□□□□ 0.69
CXCR4-201ENST00000241393 SCAF1Q9H7N4 1312 aaKnown RBP19.28■□□□□ 0.68
CXCR4-201ENST00000241393 CNKSR2Q8WXI2 1034 aa18.96■□□□□ 0.63
CXCR4-201ENST00000241393 NPM3O75607 178 aaKnown RBP18.83■□□□□ 0.61
CXCR4-201ENST00000241393 SLC4A1APQ9BWU0 796 aaKnown RBP18.8■□□□□ 0.6
CXCR4-201ENST00000241393 EHMT2Q96KQ7 1210 aa18.7■□□□□ 0.58
CXCR4-201ENST00000241393 MAPK8IP2Q13387 824 aaPredicted RBP18.6■□□□□ 0.57
CXCR4-201ENST00000241393 RNF216Q9NWF9 866 aaPredicted RBP18.47■□□□□ 0.55
CXCR4-201ENST00000241393 DMRT2Q9Y5R5 561 aa18.43■□□□□ 0.54
CXCR4-201ENST00000241393 DNAJC5BQ9UF47 199 aa18.33■□□□□ 0.52
CXCR4-201ENST00000241393 CSRNP3Q8WYN3 585 aa18.22■□□□□ 0.51
CXCR4-201ENST00000241393 HOXD11P31277 338 aaPredicted RBP18.22■□□□□ 0.51
CXCR4-201ENST00000241393 FOXD4L1Q9NU39 408 aa17.97■□□□□ 0.47
CXCR4-201ENST00000241393 ZBTB22O15209 634 aa17.86■□□□□ 0.45
CXCR4-201ENST00000241393 DCAF8L1A6NGE4 600 aa17.65■□□□□ 0.42
CXCR4-201ENST00000241393 SLC4A2P04920 1241 aa17.6■□□□□ 0.41
CXCR4-201ENST00000241393 MYCNP04198 464 aaPredicted RBP17.52■□□□□ 0.4
CXCR4-201ENST00000241393 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.45■□□□□ 0.38
CXCR4-201ENST00000241393 ATXN8OSP0DMR3 200 aa17.39■□□□□ 0.37
CXCR4-201ENST00000241393 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.31■□□□□ 0.36
CXCR4-201ENST00000241393 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
CXCR4-201ENST00000241393 SAMD1Q6SPF0 538 aaPredicted RBP17.2■□□□□ 0.34
CXCR4-201ENST00000241393 APLP2Q06481 763 aa17.1■□□□□ 0.33
CXCR4-201ENST00000241393 U3KPZ7 1027 aaPredicted RBP17.08■□□□□ 0.32
CXCR4-201ENST00000241393 POTEDQ86YR6 584 aa16.82■□□□□ 0.28
CXCR4-201ENST00000241393 ATF5Q9Y2D1 282 aaPredicted RBP16.75■□□□□ 0.27
CXCR4-201ENST00000241393 RNF39Q9H2S5 420 aa16.69■□□□□ 0.26
CXCR4-201ENST00000241393 ZNF219Q9P2Y4 722 aaPredicted RBP16.65■□□□□ 0.26
CXCR4-201ENST00000241393 C1QBPQ07021 282 aaKnown RBP16.63■□□□□ 0.25
CXCR4-201ENST00000241393 FKBP8Q14318 412 aa16.54■□□□□ 0.24
CXCR4-201ENST00000241393 CAPN15O75808 1086 aa16.49■□□□□ 0.23
CXCR4-201ENST00000241393 TRHP20396 242 aaPredicted RBP16.48■□□□□ 0.23
CXCR4-201ENST00000241393 SPINK5Q9NQ38 1064 aaPredicted RBP16.42■□□□□ 0.22
CXCR4-201ENST00000241393 NISCHQ9Y2I1 1504 aa16.39■□□□□ 0.21
CXCR4-201ENST00000241393 FBLN2P98095 1184 aa16.37■□□□□ 0.21
CXCR4-201ENST00000241393 POLA2Q14181 598 aa16.3■□□□□ 0.2
CXCR4-201ENST00000241393 ZBTB12Q9Y330 459 aaPredicted RBP16.3■□□□□ 0.2
CXCR4-201ENST00000241393 SPDYE4A6NLX3 237 aa16.14■□□□□ 0.17
CXCR4-201ENST00000241393 ABCB7O75027 752 aa16.11■□□□□ 0.17
CXCR4-201ENST00000241393 MKRN4PQ13434 485 aaPredicted RBP16.1■□□□□ 0.17
CXCR4-201ENST00000241393 FBXO3Q9UK99 471 aa16.03■□□□□ 0.16
CXCR4-201ENST00000241393 AMER1Q5JTC6 1135 aaPredicted RBP16.02■□□□□ 0.16
CXCR4-201ENST00000241393 DSG3P32926 999 aa16.01■□□□□ 0.15
CXCR4-201ENST00000241393 CACNB1Q02641 598 aaPredicted RBP15.99■□□□□ 0.15
CXCR4-201ENST00000241393 PROM2Q8N271 834 aa15.86■□□□□ 0.13
CXCR4-201ENST00000241393 SPDYE2BA6NHP3 402 aa15.78■□□□□ 0.12
CXCR4-201ENST00000241393 SPDYE6P0CI01 402 aa15.78■□□□□ 0.12
CXCR4-201ENST00000241393 SPDYE2Q495Y8 402 aa15.78■□□□□ 0.12
CXCR4-201ENST00000241393 ZNF692Q9BU19 519 aaPredicted RBP15.76■□□□□ 0.11
CXCR4-201ENST00000241393 RTN4Q9NQC3 1192 aaKnown RBP15.76■□□□□ 0.11
CXCR4-201ENST00000241393 OSCARQ8IYS5 282 aa15.7■□□□□ 0.1
CXCR4-201ENST00000241393 VASPP50552 380 aaPredicted RBP15.63■□□□□ 0.09
CXCR4-201ENST00000241393 SSUH2Q9Y2M2 353 aa15.61■□□□□ 0.09
CXCR4-201ENST00000241393 STAG3Q9UJ98 1225 aa15.57■□□□□ 0.08
CXCR4-201ENST00000241393 PABPN1Q86U42 306 aaKnown RBP eCLIP15.51■□□□□ 0.07
CXCR4-201ENST00000241393 RBM42Q9BTD8 480 aaKnown RBP15.47■□□□□ 0.07
CXCR4-201ENST00000241393 PLEKHG5O94827 1062 aa15.38■□□□□ 0.05
CXCR4-201ENST00000241393 IFNLR1Q8IU57 520 aaPredicted RBP15.35■□□□□ 0.05
CXCR4-201ENST00000241393 KLHL34Q8N239 644 aa15.35■□□□□ 0.05
CXCR4-201ENST00000241393 PLCD3Q8N3E9 789 aa15.35■□□□□ 0.05
CXCR4-201ENST00000241393 AKT1S1Q96B36 256 aa15.29■□□□□ 0.04
CXCR4-201ENST00000241393 MIER1Q8N108 512 aa15.28■□□□□ 0.04
CXCR4-201ENST00000241393 ZBTB47Q9UFB7 747 aaPredicted RBP15.28■□□□□ 0.04
CXCR4-201ENST00000241393 SPOCK2Q92563 424 aa15.26■□□□□ 0.03
CXCR4-201ENST00000241393 SPDYE1Q8NFV5 336 aaPredicted RBP15.23■□□□□ 0.03
CXCR4-201ENST00000241393 SLC24A1O60721 1099 aa15.13■□□□□ 0.01
CXCR4-201ENST00000241393 REM2Q8IYK8 340 aaPredicted RBP15.06■□□□□ 0
CXCR4-201ENST00000241393 CLEC11AQ9Y240 323 aa15.06■□□□□ 0
CXCR4-201ENST00000241393 PRR29P0C7W0 189 aa15.04■□□□□ -0
CXCR4-201ENST00000241393 DCAF8L2P0C7V8 631 aa15.02□□□□□ -0.01
CXCR4-201ENST00000241393 PKD2Q13563 968 aa15□□□□□ -0.01
CXCR4-201ENST00000241393 ECM2O94769 699 aaPredicted RBP14.97□□□□□ -0.01
CXCR4-201ENST00000241393 TRIM41Q8WV44 630 aa14.94□□□□□ -0.02
CXCR4-201ENST00000241393 CIZ1Q9ULV3 898 aaPredicted RBP14.92□□□□□ -0.02
CXCR4-201ENST00000241393 GSE1Q14687 1217 aa14.89□□□□□ -0.03
CXCR4-201ENST00000241393 PITPNM1O00562 1244 aa14.84□□□□□ -0.03
CXCR4-201ENST00000241393 CREBZFQ9NS37 354 aa14.82□□□□□ -0.04
CXCR4-201ENST00000241393 NPM1P06748 294 aaKnown RBP eCLIP14.81□□□□□ -0.04
CXCR4-201ENST00000241393 FAM212AQ96EL1 285 aa14.78□□□□□ -0.04
CXCR4-201ENST00000241393 DCAF8Q5TAQ9 597 aa14.75□□□□□ -0.05
CXCR4-201ENST00000241393 NUBP1P53384 320 aa14.74□□□□□ -0.05
CXCR4-201ENST00000241393 TAOK2Q9UL54 1235 aa14.74□□□□□ -0.05
CXCR4-201ENST00000241393 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.72□□□□□ -0.05
CXCR4-201ENST00000241393 PLCB2Q00722 1185 aa14.71□□□□□ -0.05
CXCR4-201ENST00000241393 RGL2O15211 777 aa14.68□□□□□ -0.06
CXCR4-201ENST00000241393 BBXQ8WY36 941 aaPredicted RBP14.67□□□□□ -0.06
CXCR4-201ENST00000241393 MNX1P50219 401 aaPredicted RBP14.66□□□□□ -0.06
CXCR4-201ENST00000241393 CHRM1P11229 460 aaPredicted RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms