RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 K7ERI5 159 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 LAD1O00515 517 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 IGLV3-19P01714 112 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 SFTPCP11686 197 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 PAX3P23760 479 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 OXTRP30559 389 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 ARL13BQ3SXY8 428 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 SDHAF4Q5VUM1 108 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 CCDC81Q6ZN84 652 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 FSIP1Q8NA03 581 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 ERLEC1Q96DZ1 483 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 TCEANC2Q96MN5 208 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 ASCL3Q9NQ33 180 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 DEC1Q9P2X7 70 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 PLEKHB1Q9UF11 243 aaPredicted RBP17.45■□□□□ 0.38
VPS53-218ENST00000575207 PCDHB5Q9Y5E4 795 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 PCDHB1Q9Y5F3 818 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 RAD54BQ9Y620 910 aa17.45■□□□□ 0.38
VPS53-218ENST00000575207 TULP3O75386 442 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 MPOP05164 745 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 LSSP48449 732 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 SKOR1P84550 965 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 FOXK1P85037 733 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 NUCB1Q02818 461 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 GAD2Q05329 585 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 SAFBQ15424 915 aaKnown RBP eCLIP17.44■□□□□ 0.38
VPS53-218ENST00000575207 KCNT1Q5JUK3 1230 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 LY6G5CQ5SRR4 150 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 GATAD2AQ86YP4 633 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 SLFN12Q8IYM2 578 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 BLIDQ8IZY5 108 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 TM9SF3Q9HD45 589 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 ADAMTS1Q9UHI8 967 aa17.44■□□□□ 0.38
VPS53-218ENST00000575207 UBQLN1Q9UMX0 589 aaKnown RBP17.44■□□□□ 0.38
VPS53-218ENST00000575207 GFRA2O00451 464 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 PRPF40AO75400 957 aaKnown RBP17.43■□□□□ 0.38
VPS53-218ENST00000575207 ELAVL4P26378 380 aaKnown RBP17.43■□□□□ 0.38
VPS53-218ENST00000575207 TPMTP51580 245 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 GABREP78334 506 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 SLC7A9P82251 487 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 NPY5RQ15761 445 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 KDM7AQ6ZMT4 941 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 VCPIP1Q96JH7 1222 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 PHF12Q96QT6 1004 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 MMS19Q96T76 1030 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 PLEKHA5Q9HAU0 1116 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 THSD1Q9NS62 852 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 DSEQ9UL01 958 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 ARID1BQ8NFD5 2236 aaPredicted RBP17.43■□□□□ 0.38
VPS53-218ENST00000575207 CRYBG3Q68DQ2 2970 aa17.43■□□□□ 0.38
VPS53-218ENST00000575207 PPEF2O14830 753 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 HOXC11O43248 304 aaPredicted RBP17.42■□□□□ 0.38
VPS53-218ENST00000575207 TRAK2O60296 914 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 MT-CO3P00414 261 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 GSPT1P15170 499 aaKnown RBP17.42■□□□□ 0.38
VPS53-218ENST00000575207 CYP11B2P19099 503 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 INHBCP55103 352 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 RPL10AP62906 217 aaKnown RBP17.42■□□□□ 0.38
VPS53-218ENST00000575207 ORC1Q13415 861 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 NTRK3Q16288 839 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 DDR2Q16832 855 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 CREB3L3Q68CJ9 461 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 MPZL3Q6UWV2 235 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 NEK8Q86SG6 692 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 DCP1BQ8IZD4 617 aaKnown RBP17.42■□□□□ 0.38
VPS53-218ENST00000575207 NAT16Q8N8M0 369 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 SAP25Q8TEE9 199 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 TCHPQ9BT92 498 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 NUP58Q9BVL2 599 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 TARS2Q9BW92 718 aaKnown RBP17.42■□□□□ 0.38
VPS53-218ENST00000575207 MRPL4Q9BYD3 311 aaKnown RBP17.42■□□□□ 0.38
VPS53-218ENST00000575207 MKRN2Q9H000 416 aaKnown RBP17.42■□□□□ 0.38
VPS53-218ENST00000575207 PCDHB6Q9Y5E3 794 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 OTOGQ6ZRI0 2925 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 FBN3Q75N90 2809 aa17.42■□□□□ 0.38
VPS53-218ENST00000575207 SPAG1Q07617 926 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 NECTIN1Q15223 517 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 BTBD8Q5XKL5 378 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 LAYNQ6UX15 382 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 THEM5Q8N1Q8 247 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 IFT74Q96LB3 600 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 DRC1Q96MC2 740 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 POLR1BQ9H9Y6 1135 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 TMLHEQ9NVH6 421 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 TBC1D14Q9P2M4 693 aa17.41■□□□□ 0.38
VPS53-218ENST00000575207 NF1P21359 2839 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 TTC26A0AVF1 554 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 TRIM24O15164 1050 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 CCNT1O60563 726 aaKnown RBP17.4■□□□□ 0.38
VPS53-218ENST00000575207 BAG4O95429 457 aaKnown RBP17.4■□□□□ 0.38
VPS53-218ENST00000575207 ITGB2P05107 769 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 ITGAVP06756 1048 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 CKMT2P17540 419 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 AFMP43652 599 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 ASIC1P78348 528 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 FUT11Q495W5 492 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 IGF2-ASQ6U949 168 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 EID2Q8N6I1 236 aa17.4■□□□□ 0.38
VPS53-218ENST00000575207 KRI1Q8N9T8 703 aaKnown RBP17.4■□□□□ 0.38
VPS53-218ENST00000575207 CCDC97Q96F63 343 aaPredicted RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms