RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 SEMA4CQ9C0C4 833 aa13.98□□□□□ -0.17
CCDC40-208ENST00000572270 CCSER1Q9C0I3 900 aa13.98□□□□□ -0.17
CCDC40-208ENST00000572270 SLC6A17Q9H1V8 727 aa13.98□□□□□ -0.17
CCDC40-208ENST00000572270 GMIPQ9P107 970 aa13.98□□□□□ -0.17
CCDC40-208ENST00000572270 CFAP97Q9P2B7 532 aa13.98□□□□□ -0.17
CCDC40-208ENST00000572270 DERAQ9Y315 318 aa13.98□□□□□ -0.17
CCDC40-208ENST00000572270 COL12A1Q99715 3063 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 A0A1B0GVT2 93 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 SFI1A8K8P3 1242 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 KPNA7A9QM74 516 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 TULP3O75386 442 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 ADRB2P07550 413 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 OR52Z1P0C646 297 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 MAPTP10636 758 aaKnown RBP13.97□□□□□ -0.17
CCDC40-208ENST00000572270 CDK4P11802 303 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 MYL7Q01449 175 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 KCNH2Q12809 1159 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 LY6DQ14210 128 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 RTP5Q14D33 572 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 BMP2KLQ5H9B9 411 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 INTS6LQ5JSJ4 861 aaKnown RBP13.97□□□□□ -0.17
CCDC40-208ENST00000572270 EGFLAMQ63HQ2 1017 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 PRICKLE2Q7Z3G6 844 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 MIB1Q86YT6 1006 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 ETFBKMTQ8IXQ9 262 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 SPIRE2Q8WWL2 714 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 ZNF560Q96MR9 790 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 ACBD6Q9BR61 282 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 NTPCRQ9BSD7 190 aaKnown RBP13.97□□□□□ -0.17
CCDC40-208ENST00000572270 TIPINQ9BVW5 301 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 DDX43Q9NXZ2 648 aaKnown RBP13.97□□□□□ -0.17
CCDC40-208ENST00000572270 WSB2Q9NYS7 404 aaPredicted RBP13.97□□□□□ -0.17
CCDC40-208ENST00000572270 ORC3Q9UBD5 711 aaPredicted RBP13.97□□□□□ -0.17
CCDC40-208ENST00000572270 DNM3Q9UQ16 869 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 STARD13Q9Y3M8 1113 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 PCDHGA1Q9Y5H4 931 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 RAD54BQ9Y620 910 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 CYP46A1Q9Y6A2 500 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 TMEM131Q92545 1883 aa13.97□□□□□ -0.17
CCDC40-208ENST00000572270 PTPN13Q12923 2485 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 H0YCG3 227 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 HNRNPDLO14979 420 aaKnown RBP13.96□□□□□ -0.17
CCDC40-208ENST00000572270 CDC45O75419 566 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 ABL1P00519 1130 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 AFF3P51826 1226 aaKnown RBP13.96□□□□□ -0.17
CCDC40-208ENST00000572270 UCNP55089 124 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 TMPRSS3P57727 454 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 TARDBPQ13148 414 aaKnown RBP eCLIP13.96□□□□□ -0.17
CCDC40-208ENST00000572270 MAPK7Q13164 816 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 TEAD4Q15561 434 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 ANO4Q32M45 955 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 CFAP221Q4G0U5 840 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 PKDCCQ504Y2 493 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 SCFD1Q8WVM8 642 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 SNX19Q92543 992 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 OTUB2Q96DC9 234 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 FUBP3Q96I24 572 aaKnown RBP eCLIP13.96□□□□□ -0.17
CCDC40-208ENST00000572270 GABRG3Q99928 467 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 MSTO1Q9BUK6 570 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 RUSC1Q9BVN2 902 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 CD248Q9HCU0 757 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 DPP3Q9NY33 737 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 EHD2Q9NZN4 543 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 EIF2B4Q9UI10 523 aaKnown RBP13.96□□□□□ -0.17
CCDC40-208ENST00000572270 GTF3C4Q9UKN8 822 aa13.96□□□□□ -0.17
CCDC40-208ENST00000572270 E2F8A0AVK6 867 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 HOXC11O43248 304 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-208ENST00000572270 BRINP1O60477 761 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 RFPL3O75679 317 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 MBL2P11226 248 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-208ENST00000572270 PLS3P13797 630 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 ACAT1P24752 427 aaKnown RBP13.95□□□□□ -0.18
CCDC40-208ENST00000572270 OXTRP30559 389 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 PPP3CCP48454 512 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 CSNK1EP49674 416 aaKnown RBP13.95□□□□□ -0.18
CCDC40-208ENST00000572270 ARHGAP40Q5TG30 622 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 HES3Q5TGS1 186 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 GRAMD4Q6IC98 578 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 RINT1Q6NUQ1 792 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 DIS3L2Q8IYB7 885 aaKnown RBP13.95□□□□□ -0.18
CCDC40-208ENST00000572270 SNX29Q8TEQ0 813 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 ACOX2Q99424 681 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 RNF38Q9H0F5 515 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 NXF1Q9UBU9 619 aaKnown RBP13.95□□□□□ -0.18
CCDC40-208ENST00000572270 C2CD2Q9Y426 696 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 KNTC1P50748 2209 aa13.95□□□□□ -0.18
CCDC40-208ENST00000572270 METTL12A8MUP2 240 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 E9PMD0 336 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 ENC1O14682 589 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 FAM189A1O60320 539 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 PCDHGA12O60330 932 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 DTNBO60941 627 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 ANXA13P27216 316 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 PNPLA4P41247 253 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 CLDN6P56747 220 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 STARD3Q14849 445 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 KIF19Q2TAC6 998 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 C4orf50Q6ZRC1 276 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 DENND5BQ6ZUT9 1274 aa13.94□□□□□ -0.18
CCDC40-208ENST00000572270 METTL3Q86U44 580 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms