RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 DESP17661 470 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 MIPP30301 263 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 PAPOLAP51003 745 aaKnown RBP11.21□□□□□ -0.62
CCDC40-207ENST00000572253 CDH6P55285 790 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 AP2B1P63010 937 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 KRT81Q14533 505 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 EMC1Q8N766 993 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 ACAP3Q96P50 834 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 ZNF184Q99676 751 aaPredicted RBP11.21□□□□□ -0.62
CCDC40-207ENST00000572253 WDR83Q9BRX9 315 aaKnown RBP11.21□□□□□ -0.62
CCDC40-207ENST00000572253 TAGLN3Q9UI15 199 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 USP18Q9UMW8 372 aa11.21□□□□□ -0.62
CCDC40-207ENST00000572253 TBX10O75333 385 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 KRT19P08727 400 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 GNAT1P11488 350 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 TNFSF9P41273 254 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 CPA2P48052 419 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 RAP1GDS1P52306 607 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 STXBP2Q15833 593 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 ZNF667Q5HYK9 610 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 FAM160B1Q5W0V3 765 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 ARID3BQ8IVW6 561 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 SCUBE1Q8IWY4 988 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 ZBTB10Q96DT7 871 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 ADPGKQ9BRR6 497 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 PNPLA8Q9NP80 782 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 NDE1Q9NXR1 346 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 PDP2Q9P2J9 529 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 ZNF180Q9UJW8 692 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 MAFBQ9Y5Q3 323 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 TEX264Q9Y6I9 313 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 SPDYE5A6NIY4 337 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 TRDMT1O14717 391 aaKnown RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 RGS20O76081 388 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 APBA3O96018 575 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 CD48P09326 243 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 OSBPP22059 807 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 CAPSQ13938 189 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 NOMO1Q15155 1222 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 GSTA3Q16772 222 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 NET1Q7Z628 596 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 CMASQ8NFW8 434 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 MTBPQ96DY7 904 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 MIS12Q9H081 205 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 ZNF277Q9NRM2 450 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 TELO2Q9Y4R8 837 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 PRPSAP2O60256 369 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 TRUB2O95900 331 aaKnown RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 ZBED1O96006 694 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 CHI3L2Q15782 390 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 ANGEL2Q5VTE6 544 aaKnown RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 TTC7BQ86TV6 843 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 IGDCC3Q8IVU1 814 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 MFN1Q8IWA4 741 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 WDR60Q8WVS4 1066 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 TRAPPC9Q96Q05 1148 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 LBHD1Q9BQE6 289 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 NIFKQ9BYG3 293 aaKnown RBP11.2□□□□□ -0.62
CCDC40-207ENST00000572253 NUMBLQ9Y6R0 609 aa11.2□□□□□ -0.62
CCDC40-207ENST00000572253 WNT10BO00744 389 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 MYCNP04198 464 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 BST1Q10588 318 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 KCNJ11Q14654 390 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 C1orf146Q5VVC0 180 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 ALYREFQ86V81 257 aaKnown RBP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 FAM136AQ96C01 138 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 TRIM4Q9C037 500 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 PLLPQ9Y342 182 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 CCDC195A0A1B0GUA6 201 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 UPP2O95045 317 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 PRKCBP05771 671 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 CACNA2D1P54289 1103 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 KDSRQ06136 332 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 CDK18Q07002 472 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 FAM102AQ5T9C2 384 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 THEMIS2Q5TEJ8 643 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 PRPF39Q86UA1 669 aaKnown RBP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 XYLT1Q86Y38 959 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 RAB3IL1Q8TBN0 382 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 UCMAQ8WVF2 138 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 PRR11Q96HE9 360 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 TEX13BQ9BXU2 312 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 SLC13A1Q9BZW2 595 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 CNTN3Q9P232 1028 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 C2orf71A6NGG8 1288 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 KCNN4O15554 427 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 BAG2O95816 211 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 SERPINB9P50453 376 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 ROR2Q01974 943 aaKnown RBP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 SYCP2LQ5T4T6 812 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 ARFGAP1Q8N6T3 406 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 FGD4Q96M96 766 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 PICK1Q9NRD5 415 aa11.19□□□□□ -0.62
CCDC40-207ENST00000572253 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 ZNF646O15015 1829 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-207ENST00000572253 SNUPNO95149 360 aaKnown RBP11.18□□□□□ -0.62
CCDC40-207ENST00000572253 ASPAP45381 313 aa11.18□□□□□ -0.62
CCDC40-207ENST00000572253 C1orf228Q6PIY5 440 aa11.18□□□□□ -0.62
CCDC40-207ENST00000572253 RFX8Q6ZV50 586 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms