RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 INO80Q9ULG1 1556 aaPredicted RBP11.75□□□□□ -0.53
TTC28-201ENST00000397906 NME5P56597 212 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 GIT2Q14161 759 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 REPS2Q8NFH8 660 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 ADAM2Q99965 735 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 CYP4F12Q9HCS2 524 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 NDOR1Q9UHB4 597 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 CHN1P15882 459 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 KCNK10P57789 538 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 MED21Q13503 144 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 E4F1Q66K89 784 aaPredicted RBP11.75□□□□□ -0.53
TTC28-201ENST00000397906 TIGD7Q6NT04 549 aaPredicted RBP11.75□□□□□ -0.53
TTC28-201ENST00000397906 NR2E3Q9Y5X4 410 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 MTSS1O43312 755 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 RAD51CO43502 376 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 ATP5HO75947 161 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 HPGDP15428 266 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 MSH3P20585 1137 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 GPC1P35052 558 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 CYTH1Q15438 398 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 ZFPM1Q8IX07 1006 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 SH2D3CQ8N5H7 860 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 PNMA5Q96PV4 448 aa11.75□□□□□ -0.53
TTC28-201ENST00000397906 IARS2Q9NSE4 1012 aaKnown RBP11.75□□□□□ -0.53
TTC28-201ENST00000397906 KIF20BQ96Q89 1820 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 CXCL11O14625 94 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 DYRK3O43781 588 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 STRNO43815 780 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 XYLBO75191 536 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 OR1E1P30953 314 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 SERPINB9P50453 376 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 MRNIPQ6NTE8 343 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 ADGRE3Q9BY15 652 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 SOAT2O75908 522 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 CYP24A1Q07973 514 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 NR1I3Q14994 352 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 Q4G0T1 1027 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 JAMLQ86YT9 394 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 WDR49Q8IV35 697 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 STAMBPL1Q96FJ0 436 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 TMEM176AQ96HP8 235 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 ABHD16BQ9H3Z7 469 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 GEMP55040 296 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 OCA2Q04671 838 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 KYNUQ16719 465 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 CISHQ9NSE2 258 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 PLA2G6O60733 806 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 TRPC1P48995 793 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 DAGLBQ8NCG7 672 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 MKNK1Q9BUB5 465 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 UBXN6Q9BZV1 441 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 IFRD1O00458 451 aaPredicted RBP11.74□□□□□ -0.53
TTC28-201ENST00000397906 BST2Q10589 180 aaKnown RBP11.74□□□□□ -0.53
TTC28-201ENST00000397906 CHI3L2Q15782 390 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 ATP8B4Q8TF62 1192 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 DDX4Q9NQI0 724 aaKnown RBP11.74□□□□□ -0.53
TTC28-201ENST00000397906 ITGA11Q9UKX5 1188 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 SHMT1P34896 483 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 SLC26A2P50443 739 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 SPACA7Q96KW9 195 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 SYT15Q9BQS2 421 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 KIAA1683Q9H0B3 1180 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 NAA30Q147X3 362 aaPredicted RBP11.74□□□□□ -0.53
TTC28-201ENST00000397906 MOB2Q70IA6 237 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 VPS37AQ8NEZ2 397 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 EHD4Q9H223 541 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 NUDT5Q9UKK9 219 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 GNG14A0A1W2PPG7 69 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 CAND2O75155 1236 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 PRIM2P49643 509 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 SPATA21Q7Z572 469 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 DTX3LQ8TDB6 740 aa11.74□□□□□ -0.53
TTC28-201ENST00000397906 CYP11B1P15538 503 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 CTNNB1P35222 781 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 RARS2Q5T160 578 aaKnown RBP11.73□□□□□ -0.53
TTC28-201ENST00000397906 MOXD2PA6NHM9 499 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 VIL1P09327 827 aaKnown RBP11.73□□□□□ -0.53
TTC28-201ENST00000397906 LVRNQ6Q4G3 990 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 MYO1HQ8N1T3 1032 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 PIH1D1Q9NWS0 290 aaKnown RBP11.73□□□□□ -0.53
TTC28-201ENST00000397906 SUPT7LO94864 414 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 GYPCP04921 128 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 FDFT1P37268 417 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 PPATQ06203 517 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 NT5DC4Q86YG4 428 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 SCUBE3Q8IX30 993 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 XPO6Q96QU8 1125 aaKnown RBP11.73□□□□□ -0.53
TTC28-201ENST00000397906 ZDHHC6Q9H6R6 413 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 CYTH3O43739 400 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 TMEM253P0C7T8 217 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 ARMC2Q8NEN0 867 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 RIC8BQ9NVN3 520 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 AAR2Q9Y312 384 aaKnown RBP11.73□□□□□ -0.53
TTC28-201ENST00000397906 SNX8Q9Y5X2 465 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 APOA4P06727 396 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 TBL3Q12788 808 aaKnown RBP11.73□□□□□ -0.53
TTC28-201ENST00000397906 CENPPQ6IPU0 288 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 DDX42Q86XP3 938 aaKnown RBP eCLIP11.73□□□□□ -0.53
TTC28-201ENST00000397906 SIX5Q8N196 739 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 TSPAN16Q9UKR8 245 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms