RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C TY1B-ER2Q03619 1755 aa1.91□□□□□ -2.1
NPL4YBR170C TY1B-MR1Q04214 1755 aa1.91□□□□□ -2.1
NPL4YBR170C TY1B-MR2Q04670 1755 aaKnown RBP1.91□□□□□ -2.1
NPL4YBR170C TY1B-LR1Q12088 1755 aaKnown RBP1.91□□□□□ -2.1
NPL4YBR170C TY1B-NL1Q12112 1755 aa1.91□□□□□ -2.1
NPL4YBR170C TY1B-GR1Q12141 1755 aa1.91□□□□□ -2.1
NPL4YBR170C TY1B-BLQ12490 1755 aa1.91□□□□□ -2.1
NPL4YBR170C RSF2P46974 1380 aa1.91□□□□□ -2.1
NPL4YBR170C SPO14P36126 1683 aa1.9□□□□□ -2.11
NPL4YBR170C YGL194C-AQ2V2P6 80 aa1.9□□□□□ -2.11
NPL4YBR170C TY1B-BRQ12193 1756 aa1.9□□□□□ -2.11
NPL4YBR170C TY1B-GR3Q12316 1755 aa1.9□□□□□ -2.11
NPL4YBR170C TY1B-ORQ92393 1755 aa1.9□□□□□ -2.11
NPL4YBR170C YFR010W-AP0C5N0 62 aa1.89□□□□□ -2.11
NPL4YBR170C YCR075W-AQ3E830 75 aa1.89□□□□□ -2.11
NPL4YBR170C DNF3Q12674 1656 aa1.89□□□□□ -2.11
NPL4YBR170C BUD3P25558 1636 aa1.88□□□□□ -2.11
NPL4YBR170C SNU13P39990 126 aaKnown RBP1.88□□□□□ -2.11
NPL4YBR170C YOL118CQ08259 102 aa1.88□□□□□ -2.11
NPL4YBR170C RPO21P04050 1733 aaKnown RBP1.88□□□□□ -2.11
NPL4YBR170C CHC1P22137 1653 aaKnown RBP1.88□□□□□ -2.11
NPL4YBR170C LCL1Q02786 101 aa1.88□□□□□ -2.11
NPL4YBR170C RRP5Q05022 1729 aaKnown RBP1.87□□□□□ -2.11
NPL4YBR170C NTE1Q04958 1679 aa1.87□□□□□ -2.11
NPL4YBR170C PAU5P43575 122 aa1.87□□□□□ -2.11
NPL4YBR170C SEC7P11075 2009 aaKnown RBP1.87□□□□□ -2.11
NPL4YBR170C BNI1P41832 1953 aa1.87□□□□□ -2.11
NPL4YBR170C BCK1Q01389 1478 aa1.87□□□□□ -2.11
NPL4YBR170C USO1P25386 1790 aa1.86□□□□□ -2.11
NPL4YBR170C YMR141CP40211 102 aa1.86□□□□□ -2.11
NPL4YBR170C RPA190P10964 1664 aaKnown RBP1.86□□□□□ -2.11
NPL4YBR170C UTP10P42945 1769 aaKnown RBP1.85□□□□□ -2.11
NPL4YBR170C SSS1P35179 80 aa1.85□□□□□ -2.11
NPL4YBR170C SMX2P40204 77 aaKnown RBP1.85□□□□□ -2.11
NPL4YBR170C EMC5P40540 141 aa1.85□□□□□ -2.11
NPL4YBR170C YCR095W-AQ3E787 52 aa1.84□□□□□ -2.11
NPL4YBR170C RRT15Q3E811 62 aa1.84□□□□□ -2.11
NPL4YBR170C YRF1-2P40105 1681 aa1.84□□□□□ -2.11
NPL4YBR170C URB1P34241 1764 aaKnown RBP1.84□□□□□ -2.12
NPL4YBR170C CCW14O13547 238 aa1.83□□□□□ -2.12
NPL4YBR170C HMRA1P0CY11 126 aa1.83□□□□□ -2.12
NPL4YBR170C YBR032WP38223 100 aa1.83□□□□□ -2.12
NPL4YBR170C MSL1P40567 111 aaPredicted RBP1.83□□□□□ -2.12
NPL4YBR170C IMP2P46972 177 aa1.83□□□□□ -2.12
NPL4YBR170C APC1P53886 1748 aa1.83□□□□□ -2.12
NPL4YBR170C NUP188P52593 1655 aaKnown RBP1.83□□□□□ -2.12
NPL4YBR170C TY1B-NL2Q99337 1749 aaKnown RBP1.82□□□□□ -2.12
NPL4YBR170C MYO1P08964 1928 aa1.82□□□□□ -2.12
NPL4YBR170C ROX3P25046 220 aa1.82□□□□□ -2.12
NPL4YBR170C YJR128WP47162 119 aa1.82□□□□□ -2.12
NPL4YBR170C SEC16P48415 2195 aaKnown RBP1.81□□□□□ -2.12
NPL4YBR170C LSM2P38203 95 aaKnown RBP1.8□□□□□ -2.12
NPL4YBR170C YHL005CP38752 130 aa1.8□□□□□ -2.12
NPL4YBR170C SWM2P40342 146 aa1.8□□□□□ -2.12
NPL4YBR170C YDR210WQ03482 75 aa1.8□□□□□ -2.12
NPL4YBR170C YDR029WQ12111 104 aa1.8□□□□□ -2.12
NPL4YBR170C YLR255CO13574 117 aa1.8□□□□□ -2.12
NPL4YBR170C PAI3P01094 68 aa1.8□□□□□ -2.12
NPL4YBR170C YPL038W-AQ3E7B4 63 aa1.8□□□□□ -2.12
NPL4YBR170C FAS2P19097 1887 aaKnown RBP1.79□□□□□ -2.12
NPL4YBR170C PDX3P38075 228 aaKnown RBP1.79□□□□□ -2.12
NPL4YBR170C YMR082CQ04276 118 aa1.79□□□□□ -2.12
NPL4YBR170C YOL131WQ08270 108 aa1.79□□□□□ -2.12
NPL4YBR170C YNR034W-AQ3E841 98 aa1.79□□□□□ -2.12
NPL4YBR170C YIL134C-AQ45U18 67 aa1.79□□□□□ -2.12
NPL4YBR170C GCV3P39726 170 aaPredicted RBP1.78□□□□□ -2.12
NPL4YBR170C SNA2P56508 79 aa1.78□□□□□ -2.12
NPL4YBR170C YPR145C-AQ2V2P0 78 aa1.78□□□□□ -2.12
NPL4YBR170C URA2P07259 2214 aaKnown RBP1.77□□□□□ -2.13
NPL4YBR170C PAU23Q07987 124 aa1.77□□□□□ -2.13
NPL4YBR170C PAU17Q12370 124 aa1.77□□□□□ -2.13
NPL4YBR170C YOR034C-AQ3E735 80 aa1.77□□□□□ -2.13
NPL4YBR170C YRF1-1P0CX20 1796 aa1.77□□□□□ -2.13
NPL4YBR170C YRF1-5P0CX21 1796 aa1.77□□□□□ -2.13
NPL4YBR170C YRF1-8P0CX22 1796 aa1.77□□□□□ -2.13
NPL4YBR170C PAU6P0CE90 120 aa1.77□□□□□ -2.13
NPL4YBR170C PAU18P0CE91 120 aa1.77□□□□□ -2.13
NPL4YBR170C VMA9Q3E7B6 73 aa1.77□□□□□ -2.13
NPL4YBR170C ECM12O13529 151 aa1.76□□□□□ -2.13
NPL4YBR170C BRR2P32639 2163 aaKnown RBP1.76□□□□□ -2.13
NPL4YBR170C RPL37BP51402 88 aaKnown RBP1.76□□□□□ -2.13
NPL4YBR170C CWP2P43497 92 aa1.75□□□□□ -2.13
NPL4YBR170C YCR085WP25650 117 aa1.74□□□□□ -2.13
NPL4YBR170C SUS1Q6WNK7 96 aa1.74□□□□□ -2.13
NPL4YBR170C RPA12P32529 125 aaKnown RBP1.74□□□□□ -2.13
NPL4YBR170C YNL198CP40166 100 aa1.74□□□□□ -2.13
NPL4YBR170C COX12Q01519 83 aa1.74□□□□□ -2.13
NPL4YBR170C TY4B-HP0C2J7 1802 aa1.74□□□□□ -2.13
NPL4YBR170C RPL43AP0CX25 92 aaKnown RBP1.73□□□□□ -2.13
NPL4YBR170C RPL43BP0CX26 92 aa1.73□□□□□ -2.13
NPL4YBR170C MRP17P28778 131 aa1.73□□□□□ -2.13
NPL4YBR170C YBL071CP38185 102 aa1.73□□□□□ -2.13
NPL4YBR170C ATX1P38636 73 aa1.73□□□□□ -2.13
NPL4YBR170C YDR042CQ03205 200 aa1.73□□□□□ -2.13
NPL4YBR170C POC4Q12245 148 aaPredicted RBP1.73□□□□□ -2.13
NPL4YBR170C YIL086CP40503 102 aa1.72□□□□□ -2.13
NPL4YBR170C YDR119W-AQ2V2P9 66 aa1.72□□□□□ -2.13
NPL4YBR170C MRPL38P35996 138 aaPredicted RBP1.71□□□□□ -2.13
NPL4YBR170C SHU1P38751 150 aa1.71□□□□□ -2.13
NPL4YBR170C RSM18P40033 138 aa1.71□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 17 ms