RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 DCAKDQ8WVC6 231 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 NKD2Q969F2 451 aaPredicted RBP15.72■□□□□ 0.11
USP28-214ENST00000545540 ADPGKQ9BRR6 497 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 CNTN6Q9UQ52 1028 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 MAD1L1Q9Y6D9 718 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 COL11A1P12107 1806 aaPredicted RBP15.72■□□□□ 0.11
USP28-214ENST00000545540 A0A1B0GUA9 196 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 PRPF4O43172 522 aaKnown RBP eCLIP15.72■□□□□ 0.11
USP28-214ENST00000545540 RCN2Q14257 317 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 CA9Q16790 459 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 ZNF667Q5HYK9 610 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 ATF7IP2Q5U623 682 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 C1orf127Q8N9H9 656 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 SLC5A4Q9NY91 659 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 SHOC2Q9UQ13 582 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 NFASCO94856 1347 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 MICAL2O94851 1124 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 ALADP13716 330 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 PDGFRAP16234 1089 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 EFHC2Q5JST6 749 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 JADE1Q6IE81 842 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 SCUBE3Q8IX30 993 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 UBR7Q8N806 425 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 TSSK1BQ9BXA7 367 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 CPSF3Q9UKF6 684 aaKnown RBP15.71■□□□□ 0.11
USP28-214ENST00000545540 SMG5Q9UPR3 1016 aaKnown RBP15.71■□□□□ 0.11
USP28-214ENST00000545540 DRG1Q9Y295 367 aaKnown RBP15.71■□□□□ 0.11
USP28-214ENST00000545540 LAMA3Q16787 3333 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 LACTBL1A8MY62 500 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 RNF8O76064 485 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 TNNC2P02585 160 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 HADHQ16836 314 aaKnown RBP15.71■□□□□ 0.11
USP28-214ENST00000545540 SHKBP1Q8TBC3 707 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 AS3MTQ9HBK9 375 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 ACTL7BQ9Y614 415 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 LOXHD1Q8IVV2 1947 aa15.71■□□□□ 0.11
USP28-214ENST00000545540 TRIM49D1C9J1S8 452 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 MCF2LO15068 1137 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 VTNP04004 478 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 INHBAP08476 426 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 RBL1P28749 1068 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 PCK1P35558 622 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 MCL1Q07820 350 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 TMEM62Q0P6H9 643 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 MROH9Q5TGP6 573 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 RELL1Q8IUW5 271 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 ARMC2Q8NEN0 867 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.71■□□□□ 0.1
USP28-214ENST00000545540 RXFP2Q8WXD0 754 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 CLPTM1LQ96KA5 538 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 TMEM120AQ9BXJ8 343 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 SHCBP1LQ9BZQ2 653 aa15.71■□□□□ 0.1
USP28-214ENST00000545540 FER1L6Q2WGJ9 1857 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 SYNJ2BP-COX16A0A087WUM0 186 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 SIGLEC16A6NMB1 481 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 ATG7O95352 703 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 HMGCRP04035 888 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 POLR2BP30876 1174 aaKnown RBP15.7■□□□□ 0.1
USP28-214ENST00000545540 TARBP2Q15633 366 aaKnown RBP15.7■□□□□ 0.1
USP28-214ENST00000545540 FYB2Q5VWT5 728 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 EFCAB12Q6NXP0 572 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 ZNF276Q8N554 614 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.7■□□□□ 0.1
USP28-214ENST00000545540 SLC4A11Q8NBS3 891 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 GRAMD1AQ96CP6 724 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 ANKRD36BP1Q96IX9 119 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 RNPEPQ9H4A4 650 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 COX16Q9P0S2 106 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 MYL2P10916 166 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 XRRA1Q6P2D8 792 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 TRMT10BQ6PF06 316 aaKnown RBP15.7■□□□□ 0.1
USP28-214ENST00000545540 MPP5Q8N3R9 675 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 BANPQ8N9N5 519 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 SEPT1Q8WYJ6 367 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 MMP19Q99542 508 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 CADM1Q9BY67 442 aaKnown RBP15.7■□□□□ 0.1
USP28-214ENST00000545540 HOXC10Q9NYD6 342 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 MFHAS1Q9Y4C4 1052 aa15.7■□□□□ 0.1
USP28-214ENST00000545540 MAFO75444 373 aaPredicted RBP15.69■□□□□ 0.1
USP28-214ENST00000545540 KRT36O76013 467 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 EIF4BP23588 611 aaKnown RBP15.69■□□□□ 0.1
USP28-214ENST00000545540 PHBP35232 272 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 MCCD1P59942 119 aaPredicted RBP15.69■□□□□ 0.1
USP28-214ENST00000545540 YWHAEP62258 255 aaKnown RBP15.69■□□□□ 0.1
USP28-214ENST00000545540 DALRD3Q5D0E6 543 aaKnown RBP15.69■□□□□ 0.1
USP28-214ENST00000545540 CES4AQ5XG92 561 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 RINLQ6ZS11 566 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 BBS12Q6ZW61 710 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 C7orf31Q8N865 590 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 LRMDAQ9H2I8 198 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 ACSS3Q9H6R3 686 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 DDX56Q9NY93 547 aaKnown RBP15.69■□□□□ 0.1
USP28-214ENST00000545540 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.69■□□□□ 0.1
USP28-214ENST00000545540 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.69■□□□□ 0.1
USP28-214ENST00000545540 DCTN3O75935 186 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 CYP3A5P20815 502 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 RXRBP28702 533 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 ARFIP2P53365 341 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 KDSRQ06136 332 aa15.69■□□□□ 0.1
USP28-214ENST00000545540 ACVR2BQ13705 512 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms