RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TMEM86AQ8N2M4 240 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 RNF169Q8NCN4 708 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 FBXO25Q8TCJ0 367 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 PEBP4Q96S96 227 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 PAAF1Q9BRP4 392 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 UBN1Q9NPG3 1134 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 FAN1Q9Y2M0 1017 aa21.73■■□□□ 1.07
VPS28-209ENST00000528142 CASTOR2A6NHX0 329 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 PPFIA2O75334 1257 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 MBTPS1Q14703 1052 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 CCDC142Q17RM4 750 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 C15orf59Q2T9L4 293 aaPredicted RBP21.72■■□□□ 1.07
VPS28-209ENST00000528142 RAB6CQ53S08 254 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 ART4Q93070 314 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 FAM118BQ9BPY3 351 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.72■■□□□ 1.073e-6■■□□□ 14.1
VPS28-209ENST00000528142 RAB6CQ9H0N0 254 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 STARD7Q9NQZ5 370 aa21.72■■□□□ 1.07
VPS28-209ENST00000528142 XPO1O14980 1071 aaKnown RBP21.71■■□□□ 1.07
VPS28-209ENST00000528142 LIASO43766 372 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 IVDP26440 423 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 ACADSBP45954 432 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 ARCQ7LC44 396 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 CFAP57Q96MR6 1250 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 DUSP16Q9BY84 665 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 FAM129AQ9BZQ8 928 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 DDX43Q9NXZ2 648 aaKnown RBP21.71■■□□□ 1.07
VPS28-209ENST00000528142 PHF24Q9UPV7 400 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 TP73O15350 636 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 INPPL1O15357 1258 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 RNF40O75150 1001 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 GAS8O95995 478 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 POMCP01189 267 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 LHX1P48742 406 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 DHX9Q08211 1270 aaKnown RBP21.71■■□□□ 1.07
VPS28-209ENST00000528142 GRIK3Q13003 919 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 TIGD5Q53EQ6 642 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 CD300LGQ6UXG3 332 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 DSTYKQ6XUX3 929 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 SLC26A9Q7LBE3 791 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 RTN4RL1Q86UN2 441 aaPredicted RBP21.71■■□□□ 1.07
VPS28-209ENST00000528142 CLEC4CQ8WTT0 213 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 CRTAC1Q9NQ79 661 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 RGS18Q9NS28 235 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 WHRNQ9P202 907 aa21.71■■□□□ 1.07
VPS28-209ENST00000528142 OPA1O60313 960 aa21.7■■□□□ 1.06
VPS28-209ENST00000528142 ENDOD1O94919 500 aa21.7■■□□□ 1.06
VPS28-209ENST00000528142 CCDC114Q96M63 670 aa21.7■■□□□ 1.06
VPS28-209ENST00000528142 VPS18Q9P253 973 aa21.7■■□□□ 1.06
VPS28-209ENST00000528142 H0YGN5 161 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 ARVCFO00192 962 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 CLDN5O00501 218 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 CD48P09326 243 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 HSPA8P11142 646 aaKnown RBP21.69■■□□□ 1.06
VPS28-209ENST00000528142 LCP1P13796 627 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 SDC4P31431 198 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 ARSEP51690 589 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 PLCB3Q01970 1234 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 MTMR3Q13615 1198 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 TERF2Q15554 542 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 SPDYCQ5MJ68 293 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 BBS12Q6ZW61 710 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 PIGZQ86VD9 579 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 KCTD6Q8NC69 237 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 C11orf84Q9BUA3 381 aaPredicted RBP21.69■■□□□ 1.06
VPS28-209ENST00000528142 PAK6Q9NQU5 681 aaPredicted RBP21.69■■□□□ 1.06
VPS28-209ENST00000528142 DNPEPQ9ULA0 475 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 DRG1Q9Y295 367 aaKnown RBP21.69■■□□□ 1.06
VPS28-209ENST00000528142 TIMM13Q9Y5L4 95 aaPredicted RBP21.69■■□□□ 1.06
VPS28-209ENST00000528142 NFS1Q9Y697 457 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 C9IYK1 514 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 NPR3P17342 541 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 GYS2P54840 703 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 ATP11AP98196 1134 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 TUSC3Q13454 348 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 MDH1BQ5I0G3 518 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 LRIG3Q6UXM1 1119 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 HSPH1Q92598 858 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 NKD2Q969F2 451 aaPredicted RBP21.69■■□□□ 1.06
VPS28-209ENST00000528142 RUFY1Q96T51 708 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 SYT15Q9BQS2 421 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 ASIC3Q9UHC3 531 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 PLAAQ9Y263 795 aa21.69■■□□□ 1.06
VPS28-209ENST00000528142 BEST1O76090 585 aa21.68■■□□□ 1.06
VPS28-209ENST00000528142 ITIH2P19823 946 aa21.68■■□□□ 1.06
VPS28-209ENST00000528142 IBSPP21815 317 aaPredicted RBP21.68■■□□□ 1.06
VPS28-209ENST00000528142 PTPN9P43378 593 aa21.68■■□□□ 1.06
VPS28-209ENST00000528142 LMNB2Q03252 620 aa21.68■■□□□ 1.06
VPS28-209ENST00000528142 BYSLQ13895 437 aaKnown RBP21.68■■□□□ 1.06
VPS28-209ENST00000528142 CDO1Q16878 200 aa21.68■■□□□ 1.06
VPS28-209ENST00000528142 FAM172AQ8WUF8 416 aa21.68■■□□□ 1.06
VPS28-209ENST00000528142 LINC01599Q8WXQ3 324 aa21.68■■□□□ 1.06
VPS28-209ENST00000528142 KCTD13Q8WZ19 329 aa21.68■■□□□ 1.06
VPS28-209ENST00000528142 PRPSAP2O60256 369 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 B3GAT3O94766 335 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 KLRC2P26717 231 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 FAM189BP81408 668 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 TRIP13Q15645 432 aaPredicted RBP21.67■■□□□ 1.06
VPS28-209ENST00000528142 OASLQ15646 514 aaKnown RBP21.67■■□□□ 1.06
VPS28-209ENST00000528142 RHBDF2Q6PJF5 856 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms