RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 NXF1Q9UBU9 619 aaKnown RBP10.27□□□□□ -0.77
UBR4-216ENST00000494503 EBF1Q9UH73 591 aa10.27□□□□□ -0.77
UBR4-216ENST00000494503 ATXN2Q99700 1313 aaKnown RBP10.27□□□□□ -0.77
UBR4-216ENST00000494503 ASCC3Q8N3C0 2202 aaKnown RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 A0A087X0B3 334 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 ANTXRLA6NF34 631 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 A8MXQ7 604 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 PATE3B3GLJ2 98 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 K7EQS6 105 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 SLC9A3R1O14745 358 aaPredicted RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 KIAA0391O15091 583 aaKnown RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 CLIC2O15247 247 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 CYP17A1P05093 508 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 CENPBP07199 599 aaPredicted RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 IRF1P10914 325 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 ADH5P11766 374 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 SPINK2P20155 84 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 WARSP23381 471 aaKnown RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 OPRD1P41143 372 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 ATXN3P54252 364 aaPredicted RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 TAF10Q12962 218 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 BIRC3Q13489 604 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 SNRNP35Q16560 246 aaKnown RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 ANO4Q32M45 955 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 WDR72Q3MJ13 1102 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 BTBD8Q5XKL5 378 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 PMS2CLQ68D20 193 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 FAM171BQ6P995 826 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 SCARA5Q6ZMJ2 495 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 LPCAT2Q7L5N7 544 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 DPH6Q7L8W6 267 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 TRAPPC11Q7Z392 1133 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 WDR49Q8IV35 697 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 NAT16Q8N8M0 369 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 CXorf38Q8TB03 319 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 MYCBPAPQ8TBZ2 947 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 WHAMMQ8TF30 809 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 FBXO32Q969P5 355 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 SPATA17Q96L03 361 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 CNOT6LQ96LI5 555 aaKnown RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 USP28Q96RU2 1077 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 PNKPQ96T60 521 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 LRRC27Q9C0I9 530 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 DPEP3Q9H4B8 488 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 POLMQ9NP87 494 aaPredicted RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 ARHGEF4Q9NR80 690 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 RALYQ9UKM9 306 aaKnown RBP10.26□□□□□ -0.77
UBR4-216ENST00000494503 MMP17Q9ULZ9 603 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 SH3BP1Q9Y3L3 701 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 CFAP47Q6ZTR5 3102 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 IGF2RP11717 2491 aa10.26□□□□□ -0.77
UBR4-216ENST00000494503 CEP192Q8TEP8 1941 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 ADAMTS9Q9P2N4 1935 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 TCRBV21S2A2A0A5A6 115 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 TBC1D3BA6NDS4 549 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 ZNF840PA6NDX5 716 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 CLDN5O00501 218 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 KAT7O95251 611 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 CFIP05156 583 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 SYT1P21579 422 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 YWHAQP27348 245 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 SLC6A11P48066 632 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 AMPD3Q01432 767 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 DHCR24Q15392 516 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 CRY1Q16526 586 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 FOXD4L6Q3SYB3 417 aaPredicted RBP10.25□□□□□ -0.77
UBR4-216ENST00000494503 TRIM61Q5EBN2 209 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 EOGTQ5NDL2 527 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 FOXD4L5Q5VV16 416 aaPredicted RBP10.25□□□□□ -0.77
UBR4-216ENST00000494503 KIAA1211LQ6NV74 962 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 FOXD4L3Q6VB84 417 aaPredicted RBP10.25□□□□□ -0.77
UBR4-216ENST00000494503 DDX42Q86XP3 938 aaKnown RBP eCLIP10.25□□□□□ -0.77
UBR4-216ENST00000494503 SFTPA1Q8IWL2 248 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 TMEFF1Q8IYR6 380 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 FOXD4L4Q8WXT5 416 aaPredicted RBP10.25□□□□□ -0.77
UBR4-216ENST00000494503 GTPBP2Q9BX10 602 aaKnown RBP10.25□□□□□ -0.77
UBR4-216ENST00000494503 NUSAP1Q9BXS6 441 aaKnown RBP10.25□□□□□ -0.77
UBR4-216ENST00000494503 ZNF518BQ9C0D4 1074 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 ELOVL4Q9GZR5 314 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 RNF38Q9H0F5 515 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 TNMDQ9H2S6 317 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 KIAA1586Q9HCI6 787 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 ATP8B3O60423 1300 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 CHD6Q8TD26 2715 aa10.25□□□□□ -0.77
UBR4-216ENST00000494503 FAM208BQ5VWN6 2430 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 FRMD3A2A2Y4 597 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.24□□□□□ -0.77
UBR4-216ENST00000494503 C1QTNF9BB2RNN3 333 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 SGK1O00141 431 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 TM4SF5O14894 197 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 ZBTB24O43167 697 aaPredicted RBP10.24□□□□□ -0.77
UBR4-216ENST00000494503 C1QTNF9P0C862 333 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 PFKLP17858 780 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 PTPN1P18031 435 aaKnown RBP10.24□□□□□ -0.77
UBR4-216ENST00000494503 WASP42768 502 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 PPP3CCP48454 512 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 CACNA2D1P54289 1103 aa10.24□□□□□ -0.77
UBR4-216ENST00000494503 NOP14P78316 857 aaKnown RBP10.24□□□□□ -0.77
UBR4-216ENST00000494503 IRX4P78413 519 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms