RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SLC13A5Q86YT5 568 aaPredicted RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C18orf25Q96B23 403 aaPredicted RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DNAI2Q9GZS0 605 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TRIM33Q9UPN9 1127 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 LRP5O75197 1615 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PTPRJQ12913 1337 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FAM187AA6NFU0 413 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GPR25O00155 361 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PLA2G6O60733 806 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CCDC22O60826 627 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PDE5AO76074 875 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 B3GAT3O94766 335 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RARAP10276 462 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ARL1P40616 181 aaPredicted RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NCKAP1LP55160 1127 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MCOLN2Q8IZK6 566 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MREGQ8N565 214 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 EPS8L3Q8TE67 593 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BRI3BPQ8WY22 251 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NDRG1Q92597 394 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TRIM11Q96F44 468 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ZFP42Q96MM3 310 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TMEM237Q96Q45 408 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 WNT8AQ9H1J5 351 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SEMA4AQ9H3S1 761 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 APOBEC3GQ9HC16 384 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DMAP1Q9NPF5 467 aaPredicted RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ANLNQ9NQW6 1124 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NAV1Q8NEY1 1877 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MYH11P35749 1972 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 GTPBP10A4D1E9 387 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SRGAP2BP0DMP2 458 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NCALDP61601 193 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C15orf59Q2T9L4 293 aaPredicted RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DCAF6Q58WW2 860 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DENND1BQ6P3S1 775 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FAM131BQ86XD5 332 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BHMTQ93088 406 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NXF3Q9H4D5 531 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 EBF2Q9HAK2 575 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NRAPQ86VF7 1730 aa11.2□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SCAMP3O14828 347 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HCRTO43612 131 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SNX3O60493 162 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ZBED1O96006 694 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SHBGP04278 402 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HNRNPH3P31942 346 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 IFI35P80217 286 aaPredicted RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RBP5P82980 135 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 DNAJC3Q13217 504 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RGS9BPQ6ZS82 235 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FAM71DQ8N9W8 422 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FEZF2Q8TBJ5 459 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NUF2Q9BZD4 464 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SYNPO2Q9UMS6 1093 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 LZTS1Q9Y250 596 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 COL22A1Q8NFW1 1626 aaPredicted RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 A0A1B0GUL6 1792 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ACKR2O00590 384 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CALB1P05937 261 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 HMBSP08397 361 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PTDSS1P48651 473 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 BTKQ06187 659 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SFSWAPQ12872 951 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PDIA2Q13087 525 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ZACNQ401N2 412 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MMEL1Q495T6 779 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RSPH3Q86UC2 560 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MAML1Q92585 1016 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ERP44Q9BS26 406 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PCDH10Q9P2E7 1040 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ATXN10Q9UBB4 475 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PPARGC1AQ9UBK2 798 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PCDHGC5Q9Y5F6 944 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TJP3O95049 919 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PCYT1AP49585 367 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ITGA8P53708 1063 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ESRRGP62508 458 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 PHEXP78562 749 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SURF1Q15526 300 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 CLEC16AQ2KHT3 1053 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 ENOSF1Q7L5Y1 443 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RAET1EQ8TD07 263 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TMC2Q8TDI7 906 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SCG3Q8WXD2 468 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 SHC3Q92529 594 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 TRAPPC9Q96Q05 1148 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 FIZ1Q96SL8 496 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 NT5C1AQ9BXI3 368 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 B3GNT5Q9BYG0 378 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 C10orf71Q711Q0 1435 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MYPNQ86TC9 1320 aa11.19□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MAGEB2O15479 319 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MAFO75444 373 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 APRTP07741 180 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MUTP22033 750 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 RFX1P22670 979 aa11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 THOC5Q13769 683 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-207ENST00000493662 MFSD7Q6UXD7 560 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms