RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 COL6A3P12111 3177 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 FAM170AA1A519 330 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 DDX3XO00571 662 aaKnown RBP eCLIP23.38■■□□□ 1.331e-6■■■□□ 16.8
SDC3-202ENST00000339394 POU2F2P09086 479 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 HMGA1P17096 107 aaKnown RBP23.38■■□□□ 1.33
SDC3-202ENST00000339394 EIF4A3P38919 411 aaKnown RBP23.38■■□□□ 1.33
SDC3-202ENST00000339394 GSDMDP57764 484 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 RAB41Q5JT25 222 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 NAA35Q5VZE5 725 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 SLC30A5Q8TAD4 765 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 PDLIM2Q96JY6 352 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 MSLNLQ96KJ4 702 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 NOX5Q96PH1 765 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.38■■□□□ 1.33
SDC3-202ENST00000339394 SLC4A5Q9BY07 1137 aa23.38■■□□□ 1.33
SDC3-202ENST00000339394 MAGED2Q9UNF1 606 aaPredicted RBP23.38■■□□□ 1.33
SDC3-202ENST00000339394 SSU72P8A0A1W2PR75 194 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 GABBR2O75899 941 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 RPL34P49207 117 aaKnown RBP23.37■■□□□ 1.33
SDC3-202ENST00000339394 KIF11P52732 1056 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 IFRD2Q12894 506 aaPredicted RBP23.37■■□□□ 1.33
SDC3-202ENST00000339394 MAPK8IP2Q13387 824 aaPredicted RBP23.37■■□□□ 1.33
SDC3-202ENST00000339394 TAF12Q16514 161 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 CLEC16AQ2KHT3 1053 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 VPS36Q86VN1 386 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 PPP1R13BQ96KQ4 1090 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 CPXM1Q96SM3 734 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 S1PR5Q9H228 398 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 NHEJ1Q9H9Q4 299 aaPredicted RBP23.37■■□□□ 1.33
SDC3-202ENST00000339394 LRRC4Q9HBW1 653 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 HCFC1R1Q9NWW0 138 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 IL37Q9NZH6 218 aa23.37■■□□□ 1.33
SDC3-202ENST00000339394 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.36■■□□□ 1.33
SDC3-202ENST00000339394 PIK3R2O00459 728 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 TKTL1P51854 596 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 ASTE1Q2TB18 679 aaPredicted RBP23.36■■□□□ 1.33
SDC3-202ENST00000339394 GPR149Q86SP6 731 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 TMEM110Q86TL2 294 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 SMG7Q92540 1137 aaKnown RBP23.36■■□□□ 1.33
SDC3-202ENST00000339394 MYRFLQ96LU7 910 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 CORO1BQ9BR76 489 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 ADAM7Q9H2U9 754 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 DNMT3BQ9UBC3 853 aaKnown RBP23.36■■□□□ 1.33
SDC3-202ENST00000339394 USP3Q9Y6I4 520 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 PTPRDP23468 1912 aa23.36■■□□□ 1.33
SDC3-202ENST00000339394 A0A087X0T9 212 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 RTN3O95197 1032 aaPredicted RBP23.35■■□□□ 1.33
SDC3-202ENST00000339394 FAM228BP0C875 321 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 LCP1P13796 627 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 PTPN2P17706 415 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 FECHP22830 423 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 CENPCQ03188 943 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 ADIGQ0VDE8 80 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 PTPN20Q4JDL3 420 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 CCDC42Q96M95 316 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 TTLL2Q9BWV7 592 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 LRRC3Q9BY71 257 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 UBE2ZQ9H832 354 aaPredicted RBP23.35■■□□□ 1.33
SDC3-202ENST00000339394 PIDD1Q9HB75 910 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 CYLDQ9NQC7 956 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 TAS2R14Q9NYV8 317 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 EHD2Q9NZN4 543 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 TJP2Q9UDY2 1190 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 E5RJQ4 531 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 H3BQ06 376 aaPredicted RBP23.35■■□□□ 1.33
SDC3-202ENST00000339394 YWHAQP27348 245 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 ACADSBP45954 432 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 NSFP46459 744 aaKnown RBP23.35■■□□□ 1.33
SDC3-202ENST00000339394 ITIH3Q06033 890 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 CLUL1Q15846 466 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 CYP26C1Q6V0L0 522 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 GRASPQ7Z6J2 395 aaPredicted RBP23.35■■□□□ 1.33
SDC3-202ENST00000339394 ERICH1Q86X53 443 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 TMC8Q8IU68 726 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 HS6ST3Q8IZP7 471 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 TRMT2BQ96GJ1 504 aaKnown RBP23.35■■□□□ 1.33
SDC3-202ENST00000339394 DEF6Q9H4E7 631 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 FBXO44Q9H4M3 255 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 ZNF334Q9HCZ1 680 aaPredicted RBP23.35■■□□□ 1.33
SDC3-202ENST00000339394 COMMD8Q9NX08 183 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 CDH22Q9UJ99 828 aa23.35■■□□□ 1.33
SDC3-202ENST00000339394 FAM92AA1XBS5 289 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 TMCO5BA8MYB1 307 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 GZMAP12544 262 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 KCNA5P22460 613 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 MMP8P22894 467 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 CES5AQ6NT32 575 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 TMTC1Q8IUR5 882 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 SCUBE3Q8IX30 993 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 SIX6OS1Q8N1H7 587 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 MAFAQ8NHW3 353 aaPredicted RBP23.34■■□□□ 1.33
SDC3-202ENST00000339394 HLA-CQ95604 372 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 BAG1Q99933 345 aaPredicted RBP23.34■■□□□ 1.33
SDC3-202ENST00000339394 ASAH2Q9NR71 780 aa23.34■■□□□ 1.33
SDC3-202ENST00000339394 AKR1B10O60218 316 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 ZBED1O96006 694 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 RHOP08100 348 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 USP17L7P0C7H9 530 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 GFPT1Q06210 699 aaPredicted RBP23.33■■□□□ 1.33
SDC3-202ENST00000339394 TAF10Q12962 218 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms