RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 NEK3P51956 506 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CAP1Q01518 475 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 EHHADHQ08426 723 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TRIP13Q15645 432 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ALX1Q15699 326 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 STK11Q15831 433 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TTI2Q6NXR4 508 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 FOXR2Q6PJQ5 311 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PIK3AP1Q6ZUJ8 805 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 MGARPQ8TDB4 240 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KCTD4Q8WVF5 259 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CHID1Q9BWS9 393 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 LACRTQ9GZZ8 138 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KBTBD4Q9NVX7 518 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SNTG2Q9NY99 539 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 KCNK4Q9NYG8 393 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 POLG2Q9UHN1 485 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 AP3M1Q9Y2T2 418 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CPQQ9Y646 472 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 A0A1W2PQ72 361 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 SH3D21A4FU49 640 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CCRL2O00421 344 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ELL2O00472 640 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ANGPT2O15123 496 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TOM1O60784 492 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 VAMP1P23763 118 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 HAAOP46952 286 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 MCMDC2Q4G0Z9 681 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CACHD1Q5VU97 1274 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 LACC1Q8IV20 430 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 JPH3Q8WXH2 748 aaPredicted RBP4.31□□□□□ -1.72
NEDD4-201ENST00000338963 NCLNQ969V3 563 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 TXLNGYQ9BZA5 131 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ABCG4Q9H172 646 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 PPA2Q9H2U2 334 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 CEP72Q9P209 647 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 ASB4Q9Y574 426 aa4.31□□□□□ -1.72
NEDD4-201ENST00000338963 MED23Q9ULK4 1368 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PXDNLA1KZ92 1463 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ABCA9Q8IUA7 1624 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SF3B1O75533 1304 aaKnown RBP eCLIP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 C2orf74A8MZ97 194 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PSMD11O00231 422 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PSMD12O00232 456 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 RIPK2O43353 540 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SPATA31D3P0C874 917 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SLC2A3P11169 496 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CCNE1P24864 410 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 RBL1P28749 1068 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 AXLP30530 894 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 RCAN1P53805 252 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PSMD4P55036 377 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DUSP7Q16829 419 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF568Q3ZCX4 644 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FSCBQ5H9T9 825 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 KLHDC7AQ5VTJ3 777 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 TYW1BQ6NUM6 668 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 BARGINQ6ZT62 677 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SPATA31D4Q6ZUB0 917 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ILDR2Q71H61 639 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 OSTM1Q86WC4 334 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 MB21D2Q8IYB1 491 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 SRRM1Q8IYB3 904 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ZCCHC7Q8N3Z6 543 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FLCNQ8NFG4 579 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 RAB2BQ8WUD1 216 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 HERVK_113Q902F9 699 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 NUSAP1Q9BXS6 441 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 B3GNT4Q9C0J1 378 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 GLT8D2Q9H1C3 349 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FNIP2Q9P278 1114 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FBXO2Q9UK22 296 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 GMEB2Q9UKD1 530 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF175Q9Y473 711 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 KDM6BO15054 1643 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 MST1RQ04912 1400 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 A0A1B0GW55 424 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DCDC2CA8MYV0 355 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 H3BSA7 217 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 PALMO75781 387 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 OR7A10O76100 309 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DUX4L2P0CJ85 424 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DUX4L3P0CJ86 424 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DUX4L4P0CJ87 422 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DUX4L5P0CJ88 424 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DUX4L6P0CJ89 424 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DUX4L7P0CJ90 424 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 HTR7P34969 479 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 DGUOKQ16854 277 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 STYK1Q6J9G0 422 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF704Q6ZNC4 412 aaPredicted RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 USP43Q70EL4 1123 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 FAM9CQ8IZT9 166 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CCDC33Q8N5R6 958 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 CPSF7Q8N684 471 aaKnown RBP4.3□□□□□ -1.72
NEDD4-201ENST00000338963 KBTBD3Q8NAB2 608 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 APPL2Q8NEU8 664 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 NCOA7Q8NI08 942 aa4.3□□□□□ -1.72
NEDD4-201ENST00000338963 RIN3Q8TB24 985 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms