RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 HSFY1Q96LI6 401 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.8■■□□□ 1.08
CLN3-212ENST00000564574 CYLDQ9NQC7 956 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 YIPF1Q9Y548 306 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 INSL5Q9Y5Q6 135 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 HCFC2Q9Y5Z7 792 aa21.8■■□□□ 1.08
CLN3-212ENST00000564574 F8VP50 259 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 DDX3XO00571 662 aaKnown RBP eCLIP21.79■■□□□ 1.083e-8■■■□□ 15.1
CLN3-212ENST00000564574 BEST1O76090 585 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 SRGAP2BP0DMP2 458 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 UNGP13051 313 aaPredicted RBP21.79■■□□□ 1.08
CLN3-212ENST00000564574 EPCAMP16422 314 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 CYLC1P35663 651 aaPredicted RBP21.79■■□□□ 1.08
CLN3-212ENST00000564574 ALDH1A3P47895 512 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 CACNA2D1P54289 1103 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 SNX16P57768 344 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 ADGRE1Q14246 886 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 TMEM139Q8IV31 216 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 TTC9BQ8N6N2 239 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 MSANTD4Q8NCY6 345 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 KCTD13Q8WZ19 329 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 PCDHB18PQ96TA0 734 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 MAN1C1Q9NR34 630 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 TMEM30AQ9NV96 361 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 ADAMTS1Q9UHI8 967 aa21.79■■□□□ 1.08
CLN3-212ENST00000564574 NCK2O43639 380 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 AKR1B10O60218 316 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 C8AP07357 584 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 SPATA31D3P0C874 917 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 HOXA9P31269 272 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 ACADSBP45954 432 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 CDR1P51861 262 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 CENPCQ03188 943 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 KCNC3Q14003 757 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 SLC18A3Q16572 532 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 SPATA31D4Q6ZUB0 917 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 PIGZQ86VD9 579 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 WDTC1Q8N5D0 677 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 EFHBQ8N7U6 833 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 C1orf131Q8NDD1 294 aaKnown RBP21.78■■□□□ 1.08
CLN3-212ENST00000564574 SLC7A14Q8TBB6 771 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 CASP10Q92851 521 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 FAM161BQ96MY7 647 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 KCNK16Q96T55 309 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 DZANK1Q9NVP4 752 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 COMMD8Q9NX08 183 aa21.78■■□□□ 1.08
CLN3-212ENST00000564574 LAMA2P24043 3122 aaKnown RBP21.77■■□□□ 1.08
CLN3-212ENST00000564574 ZMYND10O75800 440 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 LRG1P02750 347 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 IGFBP4P22692 258 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 NSFP46459 744 aaKnown RBP21.77■■□□□ 1.08
CLN3-212ENST00000564574 RPL34P49207 117 aaKnown RBP21.77■■□□□ 1.08
CLN3-212ENST00000564574 KIF11P52732 1056 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 HYAL1Q12794 435 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 PDCLQ13371 301 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 DDR2Q16832 855 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 PPM1LQ5SGD2 360 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 NAA35Q5VZE5 725 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 TMEM184AQ6ZMB5 413 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 SLC4A5Q9BY07 1137 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 MIS12Q9H081 205 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 MTMR10Q9NXD2 777 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 EHD2Q9NZN4 543 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 ASB3Q9Y575 518 aa21.77■■□□□ 1.08
CLN3-212ENST00000564574 ZNF638Q14966 1978 aaKnown RBP21.77■■□□□ 1.08
CLN3-212ENST00000564574 CHD7Q9P2D1 2997 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 A0A087X0T9 212 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 HHLA1C9JL84 531 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 POU2F2P09086 479 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 HNRNPA1P09651 372 aaKnown RBP eCLIP21.76■■□□□ 1.07
CLN3-212ENST00000564574 FAM228BP0C875 321 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 ATF6P18850 670 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 EPHB3P54753 998 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 TWF1Q12792 350 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 VEPH1Q14D04 833 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 RAB41Q5JT25 222 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 ACAD10Q6JQN1 1059 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 PMF1Q6P1K2 205 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 ITIH5Q86UX2 942 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 PHF13Q86YI8 300 aaPredicted RBP21.76■■□□□ 1.07
CLN3-212ENST00000564574 NUP93Q8N1F7 819 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 IPO4Q8TEX9 1081 aaKnown RBP21.76■■□□□ 1.07
CLN3-212ENST00000564574 LRRC4Q9HBW1 653 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 ZDHHC7Q9NXF8 308 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 CYTH4Q9UIA0 394 aa21.76■■□□□ 1.07
CLN3-212ENST00000564574 PRRC2BQ5JSZ5 2229 aaKnown RBP21.76■■□□□ 1.07
CLN3-212ENST00000564574 MYO16Q9Y6X6 1858 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 SOWAHDA6NJG2 315 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 TULP2O00295 520 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 TNFRSF10BO14763 440 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 ARHGAP6O43182 974 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 RTN2O75298 545 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 SOAT2O75908 522 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 RTN3O95197 1032 aaPredicted RBP21.75■■□□□ 1.07
CLN3-212ENST00000564574 CSH1P0DML2 217 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 CSH2P0DML3 217 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 GPR15P49685 360 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 LLGL2Q6P1M3 1020 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 ALKBH5Q6P6C2 394 aaKnown RBP21.75■■□□□ 1.07
CLN3-212ENST00000564574 DENND5BQ6ZUT9 1274 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms