RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 SPATA17Q96L03 361 aa22.18■■□□□ 1.14
LSM6-207ENST00000515311 PPP1R9BQ96SB3 815 aa22.18■■□□□ 1.14
LSM6-207ENST00000515311 GREB1Q4ZG55 1949 aa22.18■■□□□ 1.14
LSM6-207ENST00000515311 NCK2O43639 380 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 BEST1O76090 585 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 CYP1A1P04798 512 aaPredicted RBP22.17■■□□□ 1.14
LSM6-207ENST00000515311 IGFBP4P22692 258 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 HOXA9P31269 272 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 EIF4A3P38919 411 aaKnown RBP22.17■■□□□ 1.14
LSM6-207ENST00000515311 ALDH1A3P47895 512 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 NOMO3P69849 1222 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 Q7L0L9 218 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 TMTC1Q8IUR5 882 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 SCN4BQ8IWT1 228 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 SLC30A5Q8TAD4 765 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 CASP10Q92851 521 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 NOX5Q96PH1 765 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 KCNK16Q96T55 309 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 PCDHB18PQ96TA0 734 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 CDX2Q99626 313 aaPredicted RBP22.17■■□□□ 1.14
LSM6-207ENST00000515311 CHP1Q99653 195 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 BAG1Q99933 345 aaPredicted RBP22.17■■□□□ 1.14
LSM6-207ENST00000515311 CYLDQ9NQC7 956 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 DZANK1Q9NVP4 752 aa22.17■■□□□ 1.14
LSM6-207ENST00000515311 ZMYND10O75800 440 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 SRGAP2BP0DMP2 458 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 ATF6P18850 670 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 COL19A1Q14993 1142 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 DDR2Q16832 855 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 CLEC16AQ2KHT3 1053 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 ASTE1Q2TB18 679 aaPredicted RBP22.16■■□□□ 1.14
LSM6-207ENST00000515311 PPP1R2P3Q6NXS1 205 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 LLGL2Q6P1M3 1020 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 PIGZQ86VD9 579 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 WDTC1Q8N5D0 677 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 CCDC112Q8NEF3 446 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 VN1R2Q8NFZ6 395 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 KCTD13Q8WZ19 329 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 NHEJ1Q9H9Q4 299 aaPredicted RBP22.16■■□□□ 1.14
LSM6-207ENST00000515311 SEPT11Q9NVA2 429 aaKnown RBP22.16■■□□□ 1.14
LSM6-207ENST00000515311 ZDHHC7Q9NXF8 308 aa22.16■■□□□ 1.14
LSM6-207ENST00000515311 HHLA1C9JL84 531 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 DDX3XO00571 662 aaKnown RBP eCLIP22.15■■□□□ 1.141e-8■■■■□ 19.9
LSM6-207ENST00000515311 SOAT2O75908 522 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 PAPLNO95428 1278 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 POU2F2P09086 479 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 HNRNPA1P09651 372 aaKnown RBP eCLIP22.15■■□□□ 1.14
LSM6-207ENST00000515311 GZMAP12544 262 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 UNGP13051 313 aaPredicted RBP22.15■■□□□ 1.14
LSM6-207ENST00000515311 GTF2F1P35269 517 aaKnown RBP eCLIP22.15■■□□□ 1.14
LSM6-207ENST00000515311 RPL34P49207 117 aaKnown RBP22.15■■□□□ 1.14
LSM6-207ENST00000515311 EPHB3P54753 998 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 CENPCQ03188 943 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 TWF1Q12792 350 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 PDCLQ13371 301 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 PPM1LQ5SGD2 360 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 TMEM139Q8IV31 216 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 CCDC170Q8IYT3 715 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 C1orf131Q8NDD1 294 aaKnown RBP22.15■■□□□ 1.14
LSM6-207ENST00000515311 HSFY1Q96LI6 401 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 CCDC42Q96M95 316 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 GUCD1Q96NT3 240 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 DEF6Q9H4E7 631 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 IGFLR1Q9H665 355 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 ADAMTS1Q9UHI8 967 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 CYTH4Q9UIA0 394 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 ASB3Q9Y575 518 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 SZT2Q5T011 3432 aa22.15■■□□□ 1.14
LSM6-207ENST00000515311 A0A087X0T9 212 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 TULP2O00295 520 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 TNFRSF10BO14763 440 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 GLP2RO95838 553 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 LRG1P02750 347 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 FAM228BP0C875 321 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 GPR15P49685 360 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 ADAM15Q13444 863 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 VEPH1Q14D04 833 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 SLC18A3Q16572 532 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 RAB41Q5JT25 222 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 NAA35Q5VZE5 725 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 PMF1Q6P1K2 205 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 LRRC8AQ8IWT6 810 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 MYLIPQ8WY64 445 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.14■■□□□ 1.13
LSM6-207ENST00000515311 SLC4A5Q9BY07 1137 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 MTMR10Q9NXD2 777 aa22.14■■□□□ 1.13
LSM6-207ENST00000515311 ZNF638Q14966 1978 aaKnown RBP22.13■■□□□ 1.13
LSM6-207ENST00000515311 AKR1B10O60218 316 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 PTMAP06454 111 aaKnown RBP22.13■■□□□ 1.13
LSM6-207ENST00000515311 ACADSBP45954 432 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 KIF11P52732 1056 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 SNX16P57768 344 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 RBM10P98175 930 aaKnown RBP22.13■■□□□ 1.13
LSM6-207ENST00000515311 CTC1Q2NKJ3 1217 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 ITIH5Q86UX2 942 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 NUP93Q8N1F7 819 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 MSANTD4Q8NCY6 345 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 CMASQ8NFW8 434 aaPredicted RBP22.13■■□□□ 1.13
LSM6-207ENST00000515311 SFXN1Q9H9B4 322 aa22.13■■□□□ 1.13
LSM6-207ENST00000515311 COMMD8Q9NX08 183 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms