RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 IER5Q5VY09 327 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.06□□□□□ -1.12
NEDD9-204ENST00000448183 SEPT12Q8IYM1 358 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 SNX31Q8N9S9 440 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 OTUD5Q96G74 571 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 HES6Q96HZ4 224 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 EPS8L2Q9H6S3 715 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 FAM153AQ9UHL3 310 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 TBX20Q9UMR3 447 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 RNF103O00237 685 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 ATP9AO75110 1047 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 EPHB2P29323 1055 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 CACNA2D1P54289 1103 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 MTMR2Q13614 643 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 CCNG2Q16589 344 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 XRRA1Q6P2D8 792 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 RDM1Q8NG50 284 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 TBC1D16Q8TBP0 767 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 NMD3Q96D46 503 aaKnown RBP8.06□□□□□ -1.12
NEDD9-204ENST00000448183 HPDLQ96IR7 371 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 PRDM4Q9UKN5 801 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 LRCH1Q9Y2L9 728 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 RGS5O15539 181 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 ZC3H11AO75152 810 aaKnown RBP eCLIP8.06□□□□□ -1.12
NEDD9-204ENST00000448183 CYP11B1P15538 503 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 RFX5P48382 616 aaPredicted RBP8.06□□□□□ -1.12
NEDD9-204ENST00000448183 PTENP60484 403 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 OTUD4Q01804 1114 aaKnown RBP8.06□□□□□ -1.12
NEDD9-204ENST00000448183 WASHC5Q12768 1159 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 TP53BP2Q13625 1128 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 NFIXQ14938 502 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 SV2CQ496J9 727 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 ZBTB49Q6ZSB9 765 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 SEMA4AQ9H3S1 761 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 KCNH7Q9NS40 1196 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 TUBGCP4Q9UGJ1 667 aa8.06□□□□□ -1.12
NEDD9-204ENST00000448183 KDM6AO15550 1401 aaPredicted RBP8.06□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF839A8K0R7 811 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 AP5Z1O43299 807 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 SLC37A4O43826 429 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 SNUPNO95149 360 aaKnown RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 ASMTLO95671 621 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 PDK2Q15119 407 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 BRINP3Q76B58 766 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 ADCK2Q7Z695 626 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 TMPRSS6Q8IU80 811 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 EXD1Q8NHP7 514 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 ATXN2LQ8WWM7 1075 aaKnown RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 KLHL25Q9H0H3 589 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 KCTD10Q9H3F6 313 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 LRRC40Q9H9A6 602 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 USE1Q9NZ43 259 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 EIF3LQ9Y262 564 aaKnown RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 SAC3D1A6NKF1 404 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 PMPCBO75439 489 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 PROSCO94903 275 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 SERPIND1P05546 499 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 HMBSP08397 361 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 PPP3CCP48454 512 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 GEMP55040 296 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 RAB14P61106 215 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 TWF1Q12792 350 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 MMRN1Q13201 1228 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 R3HDM1Q15032 1099 aaKnown RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 STRIP1Q5VSL9 837 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 NAIF1Q69YI7 327 aaPredicted RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 MRNIPQ6NTE8 343 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 HHIPL2Q6UWX4 724 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF571Q7Z3V5 609 aaPredicted RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 UNC45BQ8IWX7 931 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF34Q8IZ26 560 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 C2orf69Q8N8R5 385 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 BTN2A2Q8WVV5 523 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 APBB2Q92870 758 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 PPP2R3CQ969Q6 453 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 APOL5Q9BWW9 433 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 SEMA6BQ9H3T3 888 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 OSGEPQ9NPF4 335 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 SLC38A7Q9NVC3 462 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 LSM7Q9UK45 103 aaKnown RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 NAALADL1Q9UQQ1 740 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 CACHD1Q5VU97 1274 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 SNX30Q5VWJ9 437 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 LRRC8DQ7L1W4 858 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 OR6J1Q8NGC5 347 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 MTERF3Q96E29 417 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF333Q96JL9 665 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 RUSC1Q9BVN2 902 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 GPR63Q9BZJ6 419 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 HEATR9A2RTY3 570 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 VWA5AO00534 786 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 MSH4O15457 936 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 CYTH3O43739 400 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 FCGR1AP12314 374 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 NCAM1P13591 858 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 CPA3P15088 417 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 BGNP21810 368 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 RRM1P23921 792 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 CASP4P49662 377 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms