RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ZKSCAN8Q15776 578 aaPredicted RBP16.19■□□□□ 0.18
UPF3B-202ENST00000345865 LDLRAD1Q5T700 205 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 C9orf131Q5VYM1 1079 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 CEP128Q6ZU80 1094 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 CENPUQ71F23 418 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 TDRPQ86YL5 185 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 RFX6Q8HWS3 928 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 RIBC1Q8N443 379 aaPredicted RBP16.19■□□□□ 0.18
UPF3B-202ENST00000345865 TGS1Q96RS0 853 aaKnown RBP16.19■□□□□ 0.18
UPF3B-202ENST00000345865 CALN1Q9BXU9 219 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 NSRP1Q9H0G5 558 aaKnown RBP16.19■□□□□ 0.18
UPF3B-202ENST00000345865 TUT1Q9H6E5 874 aaKnown RBP16.19■□□□□ 0.18
UPF3B-202ENST00000345865 TSPAN16Q9UKR8 245 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 NME7Q9Y5B8 376 aa16.19■□□□□ 0.18
UPF3B-202ENST00000345865 KAT6AQ92794 2004 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 RBM47A0AV96 593 aaKnown RBP16.18■□□□□ 0.18
UPF3B-202ENST00000345865 C2CD4BA6NLJ0 364 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 PPEF2O14830 753 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 TMEM63AO94886 807 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 SSTR1P30872 391 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 STX2P32856 288 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 ZNF143P52747 638 aaPredicted RBP16.18■□□□□ 0.18
UPF3B-202ENST00000345865 SNAPC2Q13487 334 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 HIF1AQ16665 826 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 FAM183BPQ6ZVS7 135 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 FAM71DQ8N9W8 422 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 GPRC5AQ8NFJ5 357 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 ACAP3Q96P50 834 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 SLC12A4Q9UP95 1085 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 USP15Q9Y4E8 981 aaPredicted RBP16.18■□□□□ 0.18
UPF3B-202ENST00000345865 APOC4-APOC2K7ER74 178 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 RNF8O76064 485 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 ENDOD1O94919 500 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 APOC2P02655 101 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 TAC1P20366 129 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 EFTUD2Q15029 972 aaKnown RBP eCLIP16.18■□□□□ 0.181e-7■■■■□ 23.5
UPF3B-202ENST00000345865 ARHGEF18Q6ZSZ5 1173 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 PPIL6Q8IXY8 311 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 TTC13Q8NBP0 860 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 DENND1AQ8TEH3 1009 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 PPP1R13LQ8WUF5 828 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 RXFP2Q8WXD0 754 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 MAGEB18Q96M61 343 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 ZMAT2Q96NC0 199 aaKnown RBP16.18■□□□□ 0.18
UPF3B-202ENST00000345865 UBN1Q9NPG3 1134 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.18■□□□□ 0.18
UPF3B-202ENST00000345865 ITGA11Q9UKX5 1188 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 GRID1Q9ULK0 1009 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 C2CD2Q9Y426 696 aa16.18■□□□□ 0.18
UPF3B-202ENST00000345865 A0A1W2PPM1 405 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 FAM47DPA6NHR8 397 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 YBX3P16989 372 aaKnown RBP eCLIP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 EPHX2P34913 555 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 RGS7P49802 495 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 EIF3EP60228 445 aaKnown RBP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 RBP5P82980 135 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 CDO1Q16878 200 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 LCLAT1Q6UWP7 414 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 USP50Q70EL3 339 aaPredicted RBP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 FUKQ8N0W3 1084 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 C4orf33Q8N1A6 199 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 RSAD2Q8WXG1 361 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 EMID1Q96A84 441 aaPredicted RBP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 KIF12Q96FN5 646 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 VTA1Q9NP79 307 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 KLC4Q9NSK0 619 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 RNF19AQ9NV58 838 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 NKIRAS1Q9NYS0 192 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 RABGEF1Q9UJ41 708 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 ASMTLO95671 621 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 RBP3P10745 1247 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 P4HA1P13674 534 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 PDGFRAP16234 1089 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 PCK1P35558 622 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 XRCC4Q13426 336 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 ACAP1Q15027 740 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 GRIK4Q16099 956 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 FAM133BQ5BKY9 247 aaKnown RBP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 PPP1R26Q5T8A7 1209 aaPredicted RBP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 OR6B2Q6IFH4 312 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 PMF1Q6P1K2 205 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 SPATA18Q8TC71 538 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 FRMD8P1Q9BZ68 369 aaPredicted RBP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 TRABDQ9H4I3 376 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 ASNSD1Q9NWL6 643 aa16.17■□□□□ 0.18
UPF3B-202ENST00000345865 ZMYND8Q9ULU4 1186 aaPredicted RBP16.17■□□□□ 0.18
UPF3B-202ENST00000345865 ADCY6O43306 1168 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 GABBR2O75899 941 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 DNAJC8O75937 253 aaPredicted RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 GPD1P21695 349 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 CDH6P55285 790 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 TMEM62Q0P6H9 643 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 KIZQ2M2Z5 673 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 PCGF5Q86SE9 256 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 TTC30AQ86WT1 665 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 SUGP1Q8IWZ8 645 aaKnown RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 SPOCK2Q92563 424 aa16.16■□□□□ 0.18
UPF3B-202ENST00000345865 MRPL45Q9BRJ2 306 aaKnown RBP16.16■□□□□ 0.18
UPF3B-202ENST00000345865 CNPY3Q9BT09 278 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms