RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 PCNTO95613 3336 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 ZNFX1Q9P2E3 1918 aaKnown RBP8.24□□□□□ -1.09
VMA21-201ENST00000330374 CLRN2A0PK11 232 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 NFIBO00712 420 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 COPEO14579 308 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 ATP9BO43861 1147 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 RNASEH1O60930 286 aaKnown RBP8.24□□□□□ -1.09
VMA21-201ENST00000330374 TOP3BO95985 862 aaKnown RBP8.24□□□□□ -1.09
VMA21-201ENST00000330374 DLDP09622 509 aaKnown RBP8.24□□□□□ -1.09
VMA21-201ENST00000330374 RARBP10826 455 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 ELK3P41970 407 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 SLC25A3Q00325 362 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 DNAJC24Q6P3W2 148 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 SLC39A4Q6P5W5 647 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 SCARA5Q6ZMJ2 495 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 CDHR3Q6ZTQ4 885 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 TRIM50Q86XT4 487 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 OGFOD1Q8N543 542 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 SLAIN1Q8ND83 568 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 SKA1Q96BD8 255 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 GMCL1Q96IK5 515 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 RBM41Q96IZ5 413 aaKnown RBP8.24□□□□□ -1.09
VMA21-201ENST00000330374 C10orf71Q711Q0 1435 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 TRIM49D1C9J1S8 452 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 TMEM63AO94886 807 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 OR6B1O95007 311 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 PGM3O95394 542 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 VIL1P09327 827 aaKnown RBP8.24□□□□□ -1.09
VMA21-201ENST00000330374 NOMO3P69849 1222 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 PEX6Q13608 980 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 MYBPC2Q14324 1141 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 PDCD2Q16342 344 aaPredicted RBP8.24□□□□□ -1.09
VMA21-201ENST00000330374 ULK2Q8IYT8 1036 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 RCOR2Q8IZ40 523 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 PDIK1LQ8N165 341 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 TMEM161BQ8NDZ6 487 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 PPP1R14CQ8TAE6 165 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 CPT1BQ92523 772 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 TRIM11Q96F44 468 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 ECSITQ9BQ95 431 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 WDR83Q9BRX9 315 aaKnown RBP8.24□□□□□ -1.09
VMA21-201ENST00000330374 CLIC5Q9NZA1 410 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 COL20A1Q9P218 1284 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 ZNF212Q9UDV6 495 aa8.24□□□□□ -1.09
VMA21-201ENST00000330374 PRR5-ARHGAP8B1AHC4 643 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 F5H423 210 aaPredicted RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 SPECC1L-ADORA2AF8WAN1 911 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 PCSK2P16519 638 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 ARHGAP8P85298 464 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 OGDHQ02218 1023 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 CHI3L2Q15782 390 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.23□□□□□ -1.09
VMA21-201ENST00000330374 ZNF276Q8N554 614 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 IFT43Q96FT9 208 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 DNAJC1Q96KC8 554 aaKnown RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 CEP170P1Q96L14 293 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 TRAPPC9Q96Q05 1148 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 TRIM56Q9BRZ2 755 aaKnown RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.23□□□□□ -1.09
VMA21-201ENST00000330374 PDP2Q9P2J9 529 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 SLC7A8Q9UHI5 535 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 CCPG1Q9ULG6 757 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 KBTBD13C9JR72 458 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 CD48P09326 243 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 SERPINB6P35237 376 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 RPL22P35268 128 aaKnown RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 HIRAP54198 1017 aaPredicted RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 AP2B1P63010 937 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 DEUP1Q05D60 604 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 CDC16Q13042 620 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 NCOA4Q13772 614 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 RC3H1Q5TC82 1133 aaKnown RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 ZBTB33Q86T24 672 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 RELL1Q8IUW5 271 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 UNC45BQ8IWX7 931 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 DCAKDQ8WVC6 231 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 HSPH1Q92598 858 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 ZBTB45Q96K62 511 aaPredicted RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 C8orf37Q96NL8 207 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 TIPINQ9BVW5 301 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 CALN1Q9BXU9 219 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 PARVAQ9NVD7 372 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 MRPL11Q9Y3B7 192 aaKnown RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 ADAMTSL1Q8N6G6 1762 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 XIRP1Q702N8 1843 aaKnown RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 E2F8A0AVK6 867 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 HNRNPCL1O60812 293 aaKnown RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 BST1Q10588 318 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 MTMR1Q13613 665 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 KLHL38Q2WGJ6 581 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 ADGRD1Q6QNK2 874 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 RFX6Q8HWS3 928 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 GPD1LQ8N335 351 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 EMC1Q8N766 993 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 MMP19Q99542 508 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 SMAD5Q99717 465 aaKnown RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 EBF4Q9BQW3 602 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 APOL6Q9BWW8 343 aa8.23□□□□□ -1.09
VMA21-201ENST00000330374 GLIS2Q9BZE0 524 aaPredicted RBP8.23□□□□□ -1.09
VMA21-201ENST00000330374 VPS11Q9H270 941 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms