RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 LPIN3Q9BQK8 851 aa12.86□□□□□ -0.35
VPS9D1-207ENST00000568691 ADPGKQ9BRR6 497 aa12.86□□□□□ -0.35
VPS9D1-207ENST00000568691 CDT1Q9H211 546 aa12.86□□□□□ -0.35
VPS9D1-207ENST00000568691 PTPRHQ9HD43 1115 aa12.86□□□□□ -0.35
VPS9D1-207ENST00000568691 PCDHB8Q9UN66 801 aa12.86□□□□□ -0.35
VPS9D1-207ENST00000568691 UNC79Q9P2D8 2635 aa12.86□□□□□ -0.35
VPS9D1-207ENST00000568691 PI4KAP42356 2102 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 SMTNL1A8MU46 457 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 TNFRSF10BO14763 440 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 ATF6P18850 670 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 P2RY2P41231 377 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 GRM5P41594 1212 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 EPHB3P54753 998 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 OSTNP61366 133 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 TPM4P67936 248 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 GPR17Q13304 367 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 USP39Q53GS9 565 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 ATF7IP2Q5U623 682 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 ANO7Q6IWH7 933 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 SARM1Q6SZW1 724 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 TMEM92Q6UXU6 159 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 MARCH9Q86YJ5 346 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 ZBTB8OSQ8IWT0 167 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 TMEFF1Q8IYR6 380 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 TSTD1Q8NFU3 115 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 USP33Q8TEY7 942 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 RAD54LQ92698 747 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 CNOT6LQ96LI5 555 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 PPP1R9BQ96SB3 815 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 PANK2Q9BZ23 570 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 TUFT1Q9NNX1 390 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 CNTN3Q9P232 1028 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 PILRBQ9UKJ0 227 aa12.85□□□□□ -0.35
VPS9D1-207ENST00000568691 BECN2A8MW95 431 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 M0QZQ0 153 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 GJB3O75712 270 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 RHOBTB3O94955 611 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 RPN1P04843 607 aaKnown RBP12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 ITPKAP23677 461 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 ERCC5P28715 1186 aaPredicted RBP12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 CDC25AP30304 524 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 CCT6AP40227 531 aaKnown RBP12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 AFMP43652 599 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 MYL5Q02045 173 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 FBXO43Q4G163 708 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 COBLL1Q53SF7 1204 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 SV2BQ7L1I2 683 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 TAS1R3Q7RTX0 852 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 SLCO6A1Q86UG4 719 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 SYT12Q8IV01 421 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 SFTPA1Q8IWL2 248 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 DHX40Q8IX18 779 aaKnown RBP12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 GRAMD1CQ8IYS0 662 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 CMTM8Q8IZV2 173 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 ERCC4Q92889 916 aaPredicted RBP12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 PNMA5Q96PV4 448 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 NUSAP1Q9BXS6 441 aaKnown RBP12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 TRIM9Q9C026 710 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 C2orf40Q9H1Z8 148 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 CAPN10Q9HC96 672 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 BLOC1S4Q9NUP1 217 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 THG1LQ9NWX6 298 aaKnown RBP12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 TUBGCP4Q9UGJ1 667 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 TNFSF13BQ9Y275 285 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 NUB1Q9Y5A7 615 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 MYO18BQ8IUG5 2567 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 ADAMTS9Q9P2N4 1935 aa12.84□□□□□ -0.35
VPS9D1-207ENST00000568691 K7EQS6 105 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 BIN1O00499 593 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 SH3BP5O60239 455 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 FTH1P19P0C7X4 201 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 NMT1P30419 496 aaKnown RBP12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 RPL9P32969 192 aaKnown RBP12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 NAMPTP43490 491 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 AARSP49588 968 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 C19orf57Q0VDD7 668 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 MESP2Q0VG99 397 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 PLD1Q13393 1074 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 TMEM132AQ24JP5 1023 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 GAB4Q2WGN9 574 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 MAP7D1Q3KQU3 841 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 ZNF658Q5TYW1 1059 aaPredicted RBP12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 LUZP1Q86V48 1076 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 C11orf74Q86VG3 221 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 APPL2Q8NEU8 664 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 ACDQ96AP0 544 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 SLC38A7Q9NVC3 462 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 ASB3Q9Y575 518 aa12.83□□□□□ -0.36
VPS9D1-207ENST00000568691 PVALEFA0A1B0GWK0 134 aa12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 EIF4E1BA6NMX2 242 aaKnown RBP12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 F11P03951 625 aa12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 BMP6P22004 513 aa12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 ALDH1A3P47895 512 aa12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 YWHAHQ04917 246 aaPredicted RBP12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 STIM1Q13586 685 aa12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 CUL4BQ13620 913 aa12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 ARHGAP15Q53QZ3 475 aa12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 LURAP1LQ8IV03 231 aa12.82□□□□□ -0.36
VPS9D1-207ENST00000568691 MINDY1Q8N5J2 469 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms