RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 MED14O60244 1454 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 ADGRA2Q96PE1 1338 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 HMGB3O15347 200 aaKnown RBP13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 GZMAP12544 262 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 PSMC3P17980 439 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 CHSY1Q86X52 802 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 ENGASEQ8NFI3 743 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 DNAJC7Q99615 494 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 FAM49BQ9NUQ9 324 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 TRMT6Q9UJA5 497 aaKnown RBP13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNF609O15014 1411 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 CYTH3O43739 400 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZC3H11AO75152 810 aaKnown RBP eCLIP13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 PDE5AO76074 875 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 FAM200BP0CF97 657 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 CALB2P22676 271 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 MAPK1P28482 360 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 PEX5P50542 639 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 RPS6P62753 249 aaKnown RBP13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 MCL1Q07820 350 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 PDK2Q15119 407 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 REXO1L1PQ8IX06 675 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 MDM1Q8TC05 714 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 HPDLQ96IR7 371 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 SH3GL1Q99961 368 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 UBE2OQ9C0C9 1292 aaKnown RBP13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZSCAN32Q9NX65 697 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 AAR2Q9Y312 384 aaKnown RBP13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 CHD1O14646 1710 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 SAC3D1A6NKF1 404 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SUPT7LO94864 414 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 F9P00740 461 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 EPHB2P29323 1055 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SOX6P35712 828 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZRANB3Q5FWF4 1079 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 UNC45BQ8IWX7 931 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SCUBE1Q8IWY4 988 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 FUT8Q9BYC5 575 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 RMND5AQ9H871 391 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 CRLS1Q9UJA2 301 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 KCNH4Q9UQ05 1017 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 OVOS2A0A0G2JMS6 1433 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 OVOS2A0A0J9YW53 1432 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 OVOS2Q6IE36 1432 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SDR42E2A6NKP2 422 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SLC25A27O95847 323 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 EIF2S1P05198 315 aaKnown RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 MLNP12872 115 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 TARSP26639 723 aaKnown RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 HARS2P49590 506 aaKnown RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SERPINB8P50452 374 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 EIF2B5Q13144 721 aaKnown RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 MTMR2Q13614 643 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 BNC2Q6ZN30 1099 aaPredicted RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 CCDC81Q6ZN84 652 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 CCDC103Q8IW40 242 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 CASKIN2Q8WXE0 1202 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNF518BQ9C0D4 1074 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 MTIF3Q9H2K0 278 aaKnown RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SLC24A2Q9UI40 661 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 PRDM15P57071 1507 aaPredicted RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 FCGR1AP12314 374 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 DAGLBQ8NCG7 672 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 MAML3Q96JK9 1138 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SH2D3AQ9BRG2 576 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 OSBPL10Q9BXB5 764 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 METTL5Q9NRN9 209 aaKnown RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 AGPAT3Q9NRZ7 376 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 ERAP1Q9NZ08 941 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 WWOXQ9NZC7 414 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 ADGRA3Q8IWK6 1321 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 RRN3P2A6NIE6 340 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 ARL4DP49703 201 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 CNTN1Q12860 1018 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 CUL2Q13617 745 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 LAMC2Q13753 1193 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 TRIP4Q15650 581 aaPredicted RBP13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 GOLGA7BQ2TAP0 167 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 SGO1Q5FBB7 561 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 LRRC8DQ7L1W4 858 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 RIN3Q8TB24 985 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 APOL5Q9BWW9 433 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 LRRC40Q9H9A6 602 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 TRPC7Q9HCX4 862 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 L1RE1Q9UN81 338 aa13.69□□□□□ -0.22
CSPG4P11-201ENST00000560634 HMBSP08397 361 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 SOAT1P35610 550 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 TAF6P49848 677 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 RAD23AP54725 363 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 SMTNL2Q2TAL5 461 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNF280CQ8ND82 737 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 MTERF3Q96E29 417 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNF333Q96JL9 665 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 FAM118BQ9BPY3 351 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 CNTNAP5Q8WYK1 1306 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 A0A087X0T9 212 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ATMINO43313 823 aaPredicted RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 TPST1O60507 370 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms