RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SYNCQ9H7C4 482 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 UBN1Q9NPG3 1134 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 EDF1O60869 148 aaKnown RBP13.52□□□□□ -0.24
LDLR-207ENST00000558013 LSM8O95777 96 aaKnown RBP13.52□□□□□ -0.24
LDLR-207ENST00000558013 EIF4BP23588 611 aaKnown RBP13.52□□□□□ -0.24
LDLR-207ENST00000558013 HHATQ5VTY9 493 aa13.52□□□□□ -0.24
LDLR-207ENST00000558013 ZPBP2Q6X784 338 aa13.52□□□□□ -0.24
LDLR-207ENST00000558013 NAT8LQ8N9F0 302 aa13.52□□□□□ -0.24
LDLR-207ENST00000558013 LRRC8CQ8TDW0 803 aa13.52□□□□□ -0.24
LDLR-207ENST00000558013 ZNF75CPQ92670 426 aaPredicted RBP13.52□□□□□ -0.24
LDLR-207ENST00000558013 PAFAH2Q99487 392 aa13.52□□□□□ -0.24
LDLR-207ENST00000558013 VPS33BQ9H267 617 aa13.52□□□□□ -0.24
LDLR-207ENST00000558013 NKX1-2Q9UD57 310 aaPredicted RBP13.52□□□□□ -0.24
LDLR-207ENST00000558013 SNCAIPQ9Y6H5 919 aa13.52□□□□□ -0.24
LDLR-207ENST00000558013 C2orf71A6NGG8 1288 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 C19orf81C9J6K1 198 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 PRPF4O43172 522 aaKnown RBP eCLIP13.52□□□□□ -0.256e-9■■□□□ 13.2
LDLR-207ENST00000558013 MIPP30301 263 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 RAD23BP54727 409 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 MKRN3Q13064 507 aaKnown RBP13.52□□□□□ -0.25
LDLR-207ENST00000558013 RIPK1Q13546 671 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 PDK4Q16654 411 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 CDO1Q16878 200 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 TLDC1Q6P9B6 456 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 RFX6Q8HWS3 928 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 CCDC33Q8N5R6 958 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 GBP7Q8N8V2 638 aaPredicted RBP13.52□□□□□ -0.25
LDLR-207ENST00000558013 KCTD6Q8NC69 237 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 TCP10LQ8TDR4 215 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 RSAD2Q8WXG1 361 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 LRRC37BQ96QE4 947 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 PEBP4Q96S96 227 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 TRIM56Q9BRZ2 755 aaKnown RBP13.52□□□□□ -0.25
LDLR-207ENST00000558013 GINM1Q9NU53 330 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 PSMC3IPQ9P2W1 217 aaPredicted RBP13.52□□□□□ -0.25
LDLR-207ENST00000558013 SHOC2Q9UQ13 582 aa13.52□□□□□ -0.25
LDLR-207ENST00000558013 TNS1Q9HBL0 1735 aaKnown RBP13.52□□□□□ -0.25
LDLR-207ENST00000558013 FAM155BO75949 473 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 CCNB1P14635 433 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 GM2AP17900 193 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 RFC5P40937 340 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 GEMIN4P57678 1058 aaKnown RBP13.51□□□□□ -0.25
LDLR-207ENST00000558013 IGBP1P78318 339 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 C15orf59Q2T9L4 293 aaPredicted RBP13.51□□□□□ -0.25
LDLR-207ENST00000558013 FAXCQ5TGI0 409 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 TRNP1Q6NT89 227 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 XYLT1Q86Y38 959 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 TDRPQ86YL5 185 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 C1orf127Q8N9H9 656 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 RFWD2Q8NHY2 731 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 SEPT1Q8WYJ6 367 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 TTC25Q96NG3 672 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 XPO7Q9UIA9 1087 aaKnown RBP13.51□□□□□ -0.25
LDLR-207ENST00000558013 STARD13Q9Y3M8 1113 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 SIGLEC16A6NMB1 481 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 GJC2Q5T442 439 aaPredicted RBP13.51□□□□□ -0.25
LDLR-207ENST00000558013 AGGF1Q8N302 714 aaeCLIP13.51□□□□□ -0.25
LDLR-207ENST00000558013 PRR11Q96HE9 360 aaPredicted RBP13.51□□□□□ -0.25
LDLR-207ENST00000558013 ELOVL4Q9GZR5 314 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 GEMIN8Q9NWZ8 242 aaKnown RBP13.51□□□□□ -0.25
LDLR-207ENST00000558013 CEP83Q9Y592 693 aa13.51□□□□□ -0.25
LDLR-207ENST00000558013 GPR25O00155 361 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 MAGEB2O15479 319 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 ITGB3P05106 788 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 RBP3P10745 1247 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 ALADP13716 330 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 GBP2P32456 591 aaPredicted RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 EFHC2Q5JST6 749 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 ATF7IP2Q5U623 682 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 PPIL6Q8IXY8 311 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 RIBC1Q8N443 379 aaPredicted RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 ZNF276Q8N554 614 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 DNERQ8NFT8 737 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 SPATA18Q8TC71 538 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 CCHCR1Q8TD31 782 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 EBF2Q9HAK2 575 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 RNF19AQ9NV58 838 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 GPATCH2LQ9NWQ4 482 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 KANSL3Q9P2N6 904 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 PCDHGC3Q9UN70 934 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 EPHB2P29323 1055 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 CDH5P33151 784 aaPredicted RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 EIF3EP60228 445 aaKnown RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 TAF1BQ53T94 588 aaPredicted RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 LBX2Q6XYB7 198 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 MTDHQ86UE4 582 aaKnown RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 LRRC6Q86X45 466 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 PALM2Q8IXS6 379 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 NIPA2Q8N8Q9 360 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 SLC4A11Q8NBS3 891 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 C10orf82Q8WW14 230 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 SLC7A6OSQ96CW6 309 aaPredicted RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 MAGEB5Q9BZ81 275 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 DDX56Q9NY93 547 aaKnown RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 KCNG1Q9UIX4 513 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 RPS12P25398 132 aaKnown RBP13.5□□□□□ -0.25
LDLR-207ENST00000558013 ABCD1P33897 745 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 ELK3P41970 407 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 ACVR2BQ13705 512 aa13.5□□□□□ -0.25
LDLR-207ENST00000558013 VGLL4Q14135 290 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms