RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 EBF3Q9H4W6 596 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 SLC39A2Q9NP94 309 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CRTAC1Q9NQ79 661 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 HPS4Q9NQG7 708 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CGNQ9P2M7 1197 aaKnown RBP15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CACNA1AO00555 2505 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CHURC1-FNTBB4DL54 471 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 LMO2P25791 158 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 GRIK1P39086 918 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 FNTBP49356 437 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 FAM160A1Q05DH4 1040 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 TRPC3Q13507 836 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 PUM1Q14671 1186 aaKnown RBP eCLIP15.64■□□□□ 0.09
SHMT2-235ENST00000557740 LPAL2Q16609 132 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 BMT2Q1RMZ1 405 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 MDH1BQ5I0G3 518 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 WDR44Q5JSH3 913 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 HEATR6Q6AI08 1181 aaKnown RBP15.64■□□□□ 0.09
SHMT2-235ENST00000557740 LAIR1Q6GTX8 287 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 VSTM1Q6UX27 236 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 DGLUCYQ7Z3D6 616 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 CPA6Q8N4T0 437 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 SPRYD3Q8NCJ5 442 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 EXOC1Q9NV70 894 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 USP18Q9UMW8 372 aa15.64■□□□□ 0.09
SHMT2-235ENST00000557740 TRIM66O15016 1216 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 EXOC3O60645 756 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 PHACTR2O75167 634 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 ARSAP15289 507 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 BDNFP23560 247 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 PDE6CP51160 858 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 DNM1Q05193 864 aaKnown RBP15.63■□□□□ 0.09
SHMT2-235ENST00000557740 USP4Q13107 963 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 CUL4BQ13620 913 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 PKP1Q13835 747 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 MTF1Q14872 753 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 KNOP1Q1ED39 458 aaKnown RBP15.63■□□□□ 0.09
SHMT2-235ENST00000557740 WDR72Q3MJ13 1102 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 C12orf56Q8IXR9 622 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 GRAMD1CQ8IYS0 662 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 OR6B3Q8NGW1 331 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 GOLGA5Q8TBA6 731 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 MYCBPAPQ8TBZ2 947 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 EXOC4Q96A65 974 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 SPATA17Q96L03 361 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 CEP295NLQ96MC4 621 aa15.63■□□□□ 0.09
SHMT2-235ENST00000557740 MRPL45Q9BRJ2 306 aaKnown RBP15.63■□□□□ 0.09
SHMT2-235ENST00000557740 DUS2Q9NX74 493 aaKnown RBP15.63■□□□□ 0.09
SHMT2-235ENST00000557740 C2orf78A6NCI8 922 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 K7ESF4 209 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 TACC1O75410 805 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 SLFN14P0C7P3 912 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 GNL1P36915 607 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-235ENST00000557740 IFNAR2P48551 515 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 LMNB2Q03252 620 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 DMWDQ09019 674 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 BIRC3Q13489 604 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 SIM2Q14190 667 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-235ENST00000557740 ZNF77Q15935 545 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 RSPO4Q2I0M5 234 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-235ENST00000557740 TMEM196Q5HYL7 178 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 DENND5BQ6ZUT9 1274 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-235ENST00000557740 LONP2Q86WA8 852 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 ARL14EPQ8N8R7 260 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-235ENST00000557740 RIN3Q8TB24 985 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 ATP2A3Q93084 1043 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 SYAP1Q96A49 352 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-235ENST00000557740 PCED1BQ96HM7 432 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 CYP2S1Q96SQ9 504 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 EHD2Q9NZN4 543 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 SERTAD1Q9UHV2 236 aa15.62■□□□□ 0.09
SHMT2-235ENST00000557740 OTOL1A6NHN0 477 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-235ENST00000557740 TRDMT1O14717 391 aaKnown RBP15.61■□□□□ 0.09
SHMT2-235ENST00000557740 CST3P01034 146 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-235ENST00000557740 FAM163BP0C2L3 166 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 ATICP31939 592 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 CNR2P34972 360 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 MYL6P60660 151 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 FSTL4Q6MZW2 842 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 CEP68Q76N32 757 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 SH3RF2Q8TEC5 729 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 OSCP1Q8WVF1 389 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 SLC22A12Q96S37 553 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 P2RY13Q9BPV8 354 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 ELOVL4Q9GZR5 314 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 C2orf42Q9NWW7 574 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 TRPM5Q9NZQ8 1165 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 NXF1Q9UBU9 619 aaKnown RBP15.61■□□□□ 0.09
SHMT2-235ENST00000557740 WNT6Q9Y6F9 365 aa15.61■□□□□ 0.09
SHMT2-235ENST00000557740 KIF26AQ9ULI4 1882 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-235ENST00000557740 FRYLO94915 3013 aa15.6■□□□□ 0.09
SHMT2-235ENST00000557740 A8MXQ7 604 aa15.6■□□□□ 0.09
SHMT2-235ENST00000557740 PRR5-ARHGAP8B1AHC4 643 aa15.6■□□□□ 0.09
SHMT2-235ENST00000557740 F8VP50 259 aa15.6■□□□□ 0.09
SHMT2-235ENST00000557740 ACTN4O43707 911 aaKnown RBP15.6■□□□□ 0.09
SHMT2-235ENST00000557740 ATG13O75143 517 aa15.6■□□□□ 0.09
SHMT2-235ENST00000557740 STAU1O95793 577 aaKnown RBP15.6■□□□□ 0.09
SHMT2-235ENST00000557740 RETP07949 1114 aa15.6■□□□□ 0.09
SHMT2-235ENST00000557740 PTPN1P18031 435 aaKnown RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms