RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 VPS54Q9P1Q0 977 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 BRPF3Q9ULD4 1205 aa9.94□□□□□ -0.82
USP28-205ENST00000537706 TSC2P49815 1807 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 ARID2Q68CP9 1835 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 PHLPP2Q6ZVD8 1323 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 STK36Q9NRP7 1315 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 BRINP1O60477 761 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 RFPL3O75679 317 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 SLITRK3O94933 977 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 TCF3P15923 654 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 ATF6P18850 670 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 CHMLP26374 656 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 ADD1P35611 737 aaKnown RBP9.93□□□□□ -0.82
USP28-205ENST00000537706 CCT8P50990 548 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 VAC14Q08AM6 782 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 NFATC3Q12968 1075 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 TARDBPQ13148 414 aaKnown RBP eCLIP9.93□□□□□ -0.827e-8■■□□□ 14.2
USP28-205ENST00000537706 UBAP2LQ14157 1087 aaKnown RBP9.93□□□□□ -0.82
USP28-205ENST00000537706 RNF20Q5VTR2 975 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 THEM5Q8N1Q8 247 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 ZNF513Q8N8E2 541 aaPredicted RBP9.93□□□□□ -0.82
USP28-205ENST00000537706 TTC9Q92623 222 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 ZMAT2Q96NC0 199 aaKnown RBP9.93□□□□□ -0.82
USP28-205ENST00000537706 EIF2AK1Q9BQI3 630 aaKnown RBP9.93□□□□□ -0.82
USP28-205ENST00000537706 TCHPQ9BT92 498 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 CCDC113Q9H0I3 377 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 RWDD1Q9H446 243 aaPredicted RBP9.93□□□□□ -0.82
USP28-205ENST00000537706 SRPK3Q9UPE1 567 aa9.93□□□□□ -0.82
USP28-205ENST00000537706 TBC1D3BA6NDS4 549 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 SLC27A2O14975 620 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 SLC37A4O43826 429 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 ADAM23O75077 832 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 ADH1CP00326 375 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 CD6P30203 668 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 NMT1P30419 496 aaKnown RBP9.92□□□□□ -0.82
USP28-205ENST00000537706 KIR2DL1P43626 348 aaPredicted RBP9.92□□□□□ -0.82
USP28-205ENST00000537706 DCP1BQ8IZD4 617 aaKnown RBP9.92□□□□□ -0.82
USP28-205ENST00000537706 BLIDQ8IZY5 108 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 KIAA1958Q8N8K9 716 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 RIN3Q8TB24 985 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 DNASE2BQ8WZ79 361 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 RNF26Q9BY78 433 aaPredicted RBP9.92□□□□□ -0.82
USP28-205ENST00000537706 DSEQ9UL01 958 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 TENM4Q6N022 2769 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 LOC400499M0QZD8 3231 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 COL5A1P20908 1838 aaPredicted RBP9.92□□□□□ -0.82
USP28-205ENST00000537706 A0A0A0MRY4 1105 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 MCF2P10911 925 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 HAPLN1P10915 354 aaPredicted RBP9.92□□□□□ -0.82
USP28-205ENST00000537706 NCAM1P13591 858 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 NTSR1P30989 418 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 KDSRQ06136 332 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 MYO1EQ12965 1108 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 EMC10Q5UCC4 262 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 BTBD8Q5XKL5 378 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 GALNT17Q6IS24 598 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 XKR5Q6UX68 686 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 DHX32Q7L7V1 743 aaKnown RBP9.92□□□□□ -0.82
USP28-205ENST00000537706 CADM4Q8NFZ8 388 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 NAF1Q96HR8 494 aaKnown RBP9.92□□□□□ -0.82
USP28-205ENST00000537706 SLC26A6Q9BXS9 759 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 CDT1Q9H211 546 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 LINC00597Q9H2U6 94 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 CPNE5Q9HCH3 593 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 BTBD3Q9Y2F9 522 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 USP20Q9Y2K6 914 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 PI4KAP42356 2102 aa9.92□□□□□ -0.82
USP28-205ENST00000537706 E2F8A0AVK6 867 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 K7ERI5 159 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 LAD1O00515 517 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 ENC1O14682 589 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 TERTO14746 1132 aaKnown RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 DFNA5O60443 496 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 LDOC1O95751 146 aaPredicted RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 AFPP02771 609 aaKnown RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 NFICP08651 508 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 RPL10AP62906 217 aaKnown RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 NUCB1Q02818 461 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 NT5DC1Q5TFE4 455 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 HES3Q5TGS1 186 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 KIAA1324Q6UXG2 1013 aaKnown RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 TMEM150AQ86TG1 271 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 ERICH1Q86X53 443 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 DHX40Q8IX18 779 aaKnown RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 KCNE4Q8WWG9 221 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 ZNF578Q96N58 590 aaPredicted RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 RPF1Q9H9Y2 349 aaKnown RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 ABI2Q9NYB9 513 aaPredicted RBP9.91□□□□□ -0.82
USP28-205ENST00000537706 ARHGAP26Q9UNA1 814 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 PCDHB5Q9Y5E4 795 aa9.91□□□□□ -0.82
USP28-205ENST00000537706 KIAA1549LQ6ZVL6 1849 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 PCDHGA12O60330 932 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 CCNT1O60563 726 aaKnown RBP9.9□□□□□ -0.82
USP28-205ENST00000537706 CYP17A1P05093 508 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 PFKLP17858 780 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 NDUFV2P19404 249 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 LRPAP1P30533 357 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 SLC6A11P48066 632 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 DHCR24Q15392 516 aa9.9□□□□□ -0.82
USP28-205ENST00000537706 DCAF12L1Q5VU92 463 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms