RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 SLC9A2Q9UBY0 812 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 MYO18AQ92614 2054 aaKnown RBP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 PSAPP07602 524 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 UNGP13051 313 aaPredicted RBP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 AMPD1P23109 780 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 CALRP27797 417 aaKnown RBP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 PTPN4P29074 926 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 PAPOLAP51003 745 aaKnown RBP13.04□□□□□ -0.32
HDAC4-208ENST00000463007 CAV1Q03135 178 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 FSTL1Q12841 308 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 PRAMEF18Q5VWM3 479 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 EFCAB3Q8N7B9 438 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 FBXO36Q8NEA4 188 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 MCPH1Q8NEM0 835 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 RNF217Q8TC41 542 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ASAP3Q8TDY4 903 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 MAIP1Q8WWC4 291 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 TSSK1BQ9BXA7 367 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 ACAD9Q9H845 621 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 MANSC1Q9H8J5 431 aa13.04□□□□□ -0.32
HDAC4-208ENST00000463007 DNALI1O14645 258 aaPredicted RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 SUPT20HL2P0C7V6 817 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 MYL2P10916 166 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 ETS2P15036 469 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 MAN1A1P33908 653 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 LIG4P49917 911 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 OSTNP61366 133 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 GCNT1Q02742 428 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 SUPT20HL1Q3ZLR7 823 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 PPP1R15BQ5SWA1 713 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 SWSAP1Q6NVH7 229 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 C4orf50Q6ZRC1 276 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 TMEM130Q8N3G9 435 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 EMC1Q8N766 993 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 TMEM143Q96AN5 459 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 TCHPQ9BT92 498 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 TMEM120AQ9BXJ8 343 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 TRIM55Q9BYV6 548 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 PPARGC1AQ9UBK2 798 aaKnown RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 LGALS13Q9UHV8 139 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 CTDP1Q9Y5B0 961 aaPredicted RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 PPP2R3BQ9Y5P8 575 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 E2F8A0AVK6 867 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 LIASO43766 372 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 LPXNO60711 386 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 GLRA2P23416 452 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 EDNRBP24530 442 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 SERPINB4P48594 390 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 NLRP11P59045 1033 aaKnown RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 KLF1Q13351 362 aaPredicted RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 MTERF2Q49AM1 385 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 CCDC62Q6P9F0 684 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 FAM71DQ8N9W8 422 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 CFAP36Q96G28 342 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 CDHR1Q96JP9 859 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 RILPQ96NA2 401 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 SH3GL3Q99963 347 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 IQCGQ9H095 443 aaKnown RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 DHX33Q9H6R0 707 aaKnown RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 SMYD3Q9H7B4 428 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 PSMC3IPQ9P2W1 217 aaPredicted RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 STOML1Q9UBI4 398 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 SEPT9Q9UHD8 586 aaPredicted RBP13.03□□□□□ -0.32
HDAC4-208ENST00000463007 PCDHB2Q9Y5E7 798 aa13.03□□□□□ -0.32
HDAC4-208ENST00000463007 LRRIQ4A6NIV6 560 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 MEI4A8MW99 385 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 B2RBV5 119 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 ZC3H11AO75152 810 aaKnown RBP eCLIP13.02□□□□□ -0.32
HDAC4-208ENST00000463007 MT-ND3P03897 115 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 SP100P23497 879 aaPredicted RBP13.02□□□□□ -0.32
HDAC4-208ENST00000463007 KLRC2P26717 231 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 NEK3P51956 506 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 GPX6P59796 221 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 RASIP1Q5U651 963 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 GPD1LQ8N335 351 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 SHKBP1Q8TBC3 707 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 DENND1AQ8TEH3 1009 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 RSAD2Q8WXG1 361 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 CCDC124Q96CT7 223 aaKnown RBP13.02□□□□□ -0.32
HDAC4-208ENST00000463007 TRIM56Q9BRZ2 755 aaKnown RBP13.02□□□□□ -0.32
HDAC4-208ENST00000463007 THTPAQ9BU02 230 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 CALN1Q9BXU9 219 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 DCLRE1BQ9H816 532 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 PICK1Q9NRD5 415 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 TJP2Q9UDY2 1190 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 PTPRJQ12913 1337 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 ADGRA2Q96PE1 1338 aa13.02□□□□□ -0.32
HDAC4-208ENST00000463007 EDN1P05305 212 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 WEE2P0C1S8 567 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 POTEJP0CG39 1038 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 PYGBP11216 843 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 CD19P15391 556 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 PGM1P36871 562 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 ALDH18A1P54886 795 aaKnown RBP13.02□□□□□ -0.33
HDAC4-208ENST00000463007 WDR72Q3MJ13 1102 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 CFAP157Q5JU67 520 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 ZCCHC23Q6ZST2 131 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 ZBTB33Q86T24 672 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 CDR2LQ86X02 465 aaPredicted RBP13.02□□□□□ -0.33
HDAC4-208ENST00000463007 RBBP8NLQ8NC74 664 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms