RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 C6orf89Q6UWU4 347 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 EXOC8Q8IYI6 725 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 CCDC197Q8NCU1 140 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 RSAD2Q8WXG1 361 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 ACAP3Q96P50 834 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 SERPINB12Q96P63 405 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 ROPN1BQ9BZX4 212 aaPredicted RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 MIS12Q9H081 205 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 ROPN1Q9HAT0 212 aaPredicted RBP10.87□□□□□ -0.67
LIMA1-201ENST00000341247 TMEM51Q9NW97 253 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 SNTG2Q9NY99 539 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 SAMD15Q9P1V8 674 aa10.87□□□□□ -0.67
LIMA1-201ENST00000341247 KRT15P19012 456 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CYP3A5P20815 502 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 GCLCP48506 637 aaPredicted RBP10.86□□□□□ -0.67
LIMA1-201ENST00000341247 SLC26A2P50443 739 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 EFTUD2Q15029 972 aaKnown RBP eCLIP10.86□□□□□ -0.67
LIMA1-201ENST00000341247 MTHFD1LQ6UB35 978 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 FAM47EQ6ZV65 393 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 UNC45BQ8IWX7 931 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 KCNN1Q92952 543 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CDHR5Q9HBB8 845 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 NGRNQ9NPE2 291 aaKnown RBP10.86□□□□□ -0.67
LIMA1-201ENST00000341247 KLK14Q9P0G3 267 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 TSPAN16Q9UKR8 245 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CCL15-CCL14A0A0B4J2E2 113 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 TCRBV7S3A2A0A539 114 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 BTBD19C9JJ37 291 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 ASAP2O43150 1006 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 RNF8O76064 485 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 PDGFRAP16234 1089 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 KDELR1P24390 212 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 STX2P32856 288 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CTCFP49711 727 aaPredicted RBP10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CDH6P55285 790 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CAV1Q03135 178 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 MYO1EQ12965 1108 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CCL15Q16663 113 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CFAP57Q96MR6 1250 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 CCDC77Q9BR77 488 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 TMEM109Q9BVC6 243 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 BCO2Q9BYV7 579 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.86□□□□□ -0.67
LIMA1-201ENST00000341247 TSPAN1O60635 241 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 AKAP5P24588 427 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 SSTR1P30872 391 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 OASLQ15646 514 aaKnown RBP10.86□□□□□ -0.67
LIMA1-201ENST00000341247 GRIK4Q16099 956 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 ZNF484Q5JVG2 852 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 MFSD5Q6N075 450 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 ZCCHC9Q8N567 271 aaKnown RBP10.86□□□□□ -0.67
LIMA1-201ENST00000341247 BBOF1Q8ND07 529 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 C18orf25Q96B23 403 aaPredicted RBP10.86□□□□□ -0.67
LIMA1-201ENST00000341247 PEBP4Q96S96 227 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 OSMRQ99650 979 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 C16orf70Q9BSU1 422 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 B3GNT5Q9BYG0 378 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 USP18Q9UMW8 372 aa10.86□□□□□ -0.67
LIMA1-201ENST00000341247 C3orf70A6NLC5 250 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 SNAI1O95863 264 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 PDGFRBP09619 1106 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 SMPD1P17405 629 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 CDH5P33151 784 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 LMNB2Q03252 620 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 BBS9Q3SYG4 887 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 FAXCQ5TGI0 409 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 TRNP1Q6NT89 227 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 PPP1R2P3Q6NXS1 205 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 CROCCP2Q86T23 111 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 RXFP2Q8WXD0 754 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 KLF6Q99612 283 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 MRPL45Q9BRJ2 306 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 EIF2AQ9BY44 585 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 MAF1Q9H063 256 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 DDX56Q9NY93 547 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 PLXNA1Q9UIW2 1896 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 DYNC1LI2O43237 492 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 MCF2P10911 925 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 GPD2P43304 727 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 YARSP54577 528 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 PKN2Q16513 984 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 GOLGA7BQ2TAP0 167 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 MSS51Q4VC12 460 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 FAM183BPQ6ZVS7 135 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 SPATS2Q86XZ4 545 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 SCUBE3Q8IX30 993 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 OR6J1Q8NGC5 347 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 MAGEB5Q9BZ81 275 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 TUBGCP4Q9UGJ1 667 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 HEY1Q9Y5J3 304 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 TRIP11Q15643 1979 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 F5H423 210 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 GOLGA8RI6L899 631 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 CDH16O75309 829 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 EIF3EP60228 445 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 CCNA1P78396 465 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 TNFAIP2Q03169 654 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 TNFAIP8L3Q5GJ75 292 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 FNBP1LQ5T0N5 605 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms