RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GDPD5Q8WTR4 605 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 RILPQ96NA2 401 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 STRA6Q9BX79 667 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 S100A14Q9HCY8 104 aa14.08□□□□□ -0.16
CCDC88C-201ENST00000331194 MYPNQ86TC9 1320 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 RBM47A0AV96 593 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 ARHGEF35A5YM69 484 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 SPECC1L-ADORA2AF8WAN1 911 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 UQCRBP14927 111 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 FUT4P22083 530 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 PCSK6P29122 969 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 CACNB3P54284 484 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 GPSM2P81274 684 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 LMNB2Q03252 620 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 C6orf163Q5TEZ5 329 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 ZCCHC23Q6ZST2 131 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 FAM172AQ8WUF8 416 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 LXNQ9BS40 222 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 CYP4F11Q9HBI6 524 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 SLC16A4O15374 487 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 ONECUT3O60422 494 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 ZNF189O75820 626 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 UFL1O94874 794 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 CFBP00751 764 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 ARP10275 920 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 SCNN1DP51172 638 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 HPCAP84074 193 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 BST1Q10588 318 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 DHDDSQ86SQ9 333 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 PALM2Q8IXS6 379 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 METTL25Q8N6Q8 603 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 MKL1Q969V6 931 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 AMNQ9BXJ7 453 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 SLC13A1Q9BZW2 595 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 UNC45AQ9H3U1 944 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 IVNS1ABPQ9Y6Y0 642 aa14.07□□□□□ -0.16
CCDC88C-201ENST00000331194 TM9SF1O15321 606 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 GAS7O60861 476 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 PSMD10O75832 226 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 TOP3BO95985 862 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 EN1Q05925 392 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 MORF4L2Q15014 288 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 TRIP10Q15642 601 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 PADI6Q6TGC4 694 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 FBXO11Q86XK2 927 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 MMP19Q99542 508 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 TDRKHQ9Y2W6 561 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 MYH9P35579 1960 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 CAPN8A6NHC0 703 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 TLR3O15455 904 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 NSFP46459 744 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 IRX4P78413 519 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 PTK7Q13308 1070 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 MPP3Q13368 585 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 SPOPLQ6IQ16 392 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 KLHDC10Q6PID8 442 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 CEP70Q8NHQ1 597 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 NT5C1BQ96P26 610 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 GRIP2Q9C0E4 1043 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 USP29Q9HBJ7 922 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 SEL1LQ9UBV2 794 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 TAGLN3Q9UI15 199 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 ATP2A1O14983 1001 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 KRT1P04264 644 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 DHRS4L1P0CG22 281 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 SMIM18P0DKX4 95 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 TMPRSS15P98073 1019 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 NFIAQ12857 509 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 MAMLD1Q13495 774 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 HNRNPDQ14103 355 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 SNRNP35Q16560 246 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 GRAMD1BQ3KR37 738 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 TCHHL1Q5QJ38 904 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 OGFOD1Q8N543 542 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 CLMNQ96JQ2 1002 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 NACC1Q96RE7 527 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 MIS12Q9H081 205 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 TUFT1Q9NNX1 390 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 IL1RAPL1Q9NZN1 696 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 STRIP2Q9ULQ0 834 aa14.06□□□□□ -0.16
CCDC88C-201ENST00000331194 PLIN4Q96Q06 1357 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 F8VP50 259 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 AVILO75366 819 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 TFAP2AP05549 437 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 SERPINB6P35237 376 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 GTF2IP78347 998 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 FOLH1Q04609 750 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 TCP10Q12799 353 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 KBTBD12Q3ZCT8 623 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 UGT2A3Q6UWM9 527 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 DENND5BQ6ZUT9 1274 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 KATNAL2Q8IYT4 538 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 CPT1BQ92523 772 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 SLITRK1Q96PX8 696 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 KLHL4Q9C0H6 718 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 RAB20Q9NX57 234 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 C15orf38-AP3S2A0A0A6YYH1 394 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 ZMPSTE24O75844 475 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 TMEM63AO94886 807 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 TGDSO95455 350 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms