RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MTM1Q13496 603 aa21.08■□□□□ 0.96
VPS53-201ENST00000291074 USP50Q70EL3 339 aaPredicted RBP21.08■□□□□ 0.96
VPS53-201ENST00000291074 ZBED8Q8IZ13 594 aa21.08■□□□□ 0.96
VPS53-201ENST00000291074 PRCCQ92733 491 aaPredicted RBP21.08■□□□□ 0.96
VPS53-201ENST00000291074 ZNF408Q9H9D4 720 aa21.08■□□□□ 0.96
VPS53-201ENST00000291074 H3BRB1 525 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 ZNF268Q14587 947 aaPredicted RBP21.07■□□□□ 0.96
VPS53-201ENST00000291074 MORF4L2Q15014 288 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 ANKRD22Q5VYY1 191 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 TRNP1Q6NT89 227 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 C12orf29Q8N999 325 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 CCT6BQ92526 530 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 MRRFQ96E11 262 aaKnown RBP21.07■□□□□ 0.96
VPS53-201ENST00000291074 MCRS1Q96EZ8 462 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 PEBP4Q96S96 227 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 CCDC77Q9BR77 488 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 TUT1Q9H6E5 874 aaKnown RBP21.07■□□□□ 0.96
VPS53-201ENST00000291074 DPP3Q9NY33 737 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 WDR35Q9P2L0 1181 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 GINS2Q9Y248 185 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 POC1B-GALNT4F8VUJ3 575 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 GRAP2O75791 330 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 ATICP31939 592 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 NRLP54845 237 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 TMEM62Q0P6H9 643 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 MYO1EQ12965 1108 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 BBS12Q6ZW61 710 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 ANKMY2Q8IV38 441 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 KCTD6Q8NC69 237 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 SLC10A4Q96EP9 437 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 CFAP57Q96MR6 1250 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 ADPGKQ9BRR6 497 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 CALN1Q9BXU9 219 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 ADAM33Q9BZ11 813 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 FOXP3Q9BZS1 431 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 KATNBL1Q9H079 304 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 VRTNQ9H8Y1 702 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 VTA1Q9NP79 307 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 FGFR1OP2Q9NVK5 253 aa21.07■□□□□ 0.96
VPS53-201ENST00000291074 LOC102724159A0A0B4J2E5 919 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 PDHXO00330 501 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 ABHD2P08910 425 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 PDIA2Q13087 525 aaKnown RBP21.06■□□□□ 0.96
VPS53-201ENST00000291074 PWP2Q15269 919 aaKnown RBP21.06■□□□□ 0.96
VPS53-201ENST00000291074 LDLRAD1Q5T700 205 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 RFX6Q8HWS3 928 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 ACAP3Q96P50 834 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 VPS37BQ9H9H4 285 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 CYP3A43Q9HB55 503 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 SAMD15Q9P1V8 674 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 SNAI1O95863 264 aaPredicted RBP21.06■□□□□ 0.96
VPS53-201ENST00000291074 VDRP11473 427 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 GSCP56915 257 aaPredicted RBP21.06■□□□□ 0.96
VPS53-201ENST00000291074 MMRN1Q13201 1228 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 MARCH8Q5T0T0 291 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 CNPY4Q8N129 248 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 KIF12Q96FN5 646 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 RNF19AQ9NV58 838 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 TSPAN16Q9UKR8 245 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 PNMA3Q9UL41 463 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 BARX2Q9UMQ3 279 aaPredicted RBP21.06■□□□□ 0.96
VPS53-201ENST00000291074 USP18Q9UMW8 372 aa21.06■□□□□ 0.96
VPS53-201ENST00000291074 RASA4BC9J798 803 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 E5RJQ4 531 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 RASA4O43374 803 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 GABRB2P47870 512 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 CTCFP49711 727 aaPredicted RBP21.05■□□□□ 0.96
VPS53-201ENST00000291074 RGS7P49802 495 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 GRIK4Q16099 956 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 TAZQ16635 292 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 C15orf59Q2T9L4 293 aaPredicted RBP21.05■□□□□ 0.96
VPS53-201ENST00000291074 UNC45BQ8IWX7 931 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 MAML1Q92585 1016 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 SHOC2Q9UQ13 582 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 PPEF2O14830 753 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 ECM2O94769 699 aaPredicted RBP21.05■□□□□ 0.96
VPS53-201ENST00000291074 TRUB2O95900 331 aaKnown RBP21.05■□□□□ 0.96
VPS53-201ENST00000291074 HMGCRP04035 888 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 P4HA1P13674 534 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 ZKSCAN8Q15776 578 aaPredicted RBP21.05■□□□□ 0.96
VPS53-201ENST00000291074 CDO1Q16878 200 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 CCDC142Q17RM4 750 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 KIZQ2M2Z5 673 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 ZC3H15Q8WU90 426 aaKnown RBP21.05■□□□□ 0.96
VPS53-201ENST00000291074 KIF9Q9HAQ2 790 aa21.05■□□□□ 0.96
VPS53-201ENST00000291074 FARP1Q9Y4F1 1045 aaPredicted RBP21.05■□□□□ 0.96
VPS53-201ENST00000291074 RNF8O76064 485 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 OR6B2Q6IFH4 312 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 NPNTQ6UXI9 565 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 FAM183BPQ6ZVS7 135 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 CPT1BQ92523 772 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 A0A1B0GUA9 196 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 TCRBV7S3A2A0A539 114 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 CCT8L1PA6NM43 557 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 SPAG7O75391 227 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 PIAS1O75925 651 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 RPL22P35268 128 aaKnown RBP21.04■□□□□ 0.96
VPS53-201ENST00000291074 CCNA1P78396 465 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 RBP5P82980 135 aa21.04■□□□□ 0.96
VPS53-201ENST00000291074 INCA1Q0VD86 236 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms